Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   JGX27_RS10890 Genome accession   NZ_CP077423
Coordinates   2176029..2176742 (+) Length   237 a.a.
NCBI ID   WP_009855151.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2171029..2181742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS10880 (JGX27_10880) treC 2172214..2173845 (-) 1632 WP_043878622.1 alpha,alpha-phosphotrehalase -
  JGX27_RS10885 (JGX27_10885) treP 2173860..2175833 (-) 1974 WP_009855149.1 PTS system trehalose-specific EIIBC component -
  JGX27_RS10890 (JGX27_10890) treR 2176029..2176742 (+) 714 WP_009855151.1 trehalose operon repressor Regulator
  JGX27_RS10895 (JGX27_10895) - 2177043..2177870 (-) 828 WP_009855152.1 class C sortase -
  JGX27_RS10900 (JGX27_10900) - 2178058..2179500 (-) 1443 WP_009855153.1 isopeptide-forming domain-containing fimbrial protein -
  JGX27_RS10905 (JGX27_10905) - 2179607..2181583 (-) 1977 WP_009855154.1 Cna B-type domain-containing protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27418.41 Da        Isoelectric Point: 7.3315

>NTDB_id=581532 JGX27_RS10890 WP_009855151.1 2176029..2176742(+) (treR) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MKKYEQIFKELEHDITSGIYQAGDYLPTENELTQTYHMSRDTIRKALSLLAEAGLIQKIHGSGSQVIKHEQIDFPVSQLT
SYKELVDAHHINSKTNVIAIDKLIVDEKLAALTGFKKNNLVWRIIRQRVVDGTASVLDIDYLDKKIVPNMTREIAEQSIY
DYLENQLHLIIAYAQKEITIDQLTDRDKLLLDIGAEHHVVSVKSKVYLANKHQFQFTESRHKLEKFRFVDFATRKPQ

Nucleotide


Download         Length: 714 bp        

>NTDB_id=581532 JGX27_RS10890 WP_009855151.1 2176029..2176742(+) (treR) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGAAAAAATACGAACAAATCTTTAAAGAACTTGAACACGATATCACCTCTGGCATTTACCAAGCAGGTGACTATCTCCC
CACTGAAAACGAGCTAACCCAGACCTACCATATGAGCCGTGACACTATCCGCAAAGCGCTTAGTCTCCTTGCTGAAGCAG
GGCTTATCCAGAAAATTCACGGTTCTGGCTCTCAAGTCATCAAGCACGAACAGATTGATTTTCCCGTTTCACAGCTCACA
AGCTATAAAGAACTGGTCGACGCTCACCATATCAATTCCAAAACCAATGTCATTGCCATTGATAAACTTATCGTTGATGA
AAAATTAGCTGCGCTGACAGGTTTCAAGAAAAATAACCTTGTCTGGCGAATCATTCGCCAACGTGTCGTTGACGGCACCG
CTTCTGTCCTTGACATTGATTATTTAGACAAAAAAATCGTGCCAAATATGACACGAGAAATCGCCGAACAATCCATTTAC
GATTACCTTGAAAACCAACTCCACCTCATCATCGCTTACGCTCAAAAAGAAATCACCATTGACCAGCTAACTGACCGTGA
CAAACTACTCCTTGACATCGGCGCCGAACACCACGTTGTCTCTGTCAAATCAAAAGTTTACCTCGCCAACAAACACCAAT
TCCAATTCACCGAAAGCAGACACAAACTCGAGAAATTCCGCTTCGTTGACTTCGCAACCCGAAAACCACAGTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

72.222

98.734

0.713