Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JGX27_RS10485 Genome accession   NZ_CP077423
Coordinates   2091834..2093195 (-) Length   453 a.a.
NCBI ID   WP_043878614.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2086834..2098195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS10465 (JGX27_10465) - 2087323..2088489 (-) 1167 WP_009855070.1 MFS transporter -
  JGX27_RS10470 (JGX27_10470) gltX 2088975..2090432 (-) 1458 WP_043878613.1 glutamate--tRNA ligase -
  JGX27_RS10475 (JGX27_10475) - 2090617..2091111 (-) 495 WP_009855072.1 LURP-one-related family protein -
  JGX27_RS10480 (JGX27_10480) - 2091214..2091708 (-) 495 WP_003066696.1 carbonic anhydrase -
  JGX27_RS10485 (JGX27_10485) radA 2091834..2093195 (-) 1362 WP_043878614.1 DNA repair protein RadA Machinery gene
  JGX27_RS10490 (JGX27_10490) - 2093213..2093746 (-) 534 WP_009855074.1 histidine phosphatase family protein -
  JGX27_RS10495 (JGX27_10495) - 2093777..2094223 (-) 447 WP_009855075.1 dUTP diphosphatase -
  JGX27_RS10500 (JGX27_10500) - 2094317..2095546 (-) 1230 WP_009855076.1 hypothetical protein -
  JGX27_RS10505 (JGX27_10505) - 2095562..2096764 (-) 1203 WP_009855077.1 hypothetical protein -
  JGX27_RS10510 (JGX27_10510) - 2096929..2097696 (-) 768 WP_009855078.1 epoxyqueuosine reductase QueH -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49440.72 Da        Isoelectric Point: 6.0243

>NTDB_id=581530 JGX27_RS10485 WP_043878614.1 2091834..2093195(-) (radA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLSGIDIPDNIQVIGVTTVGEVLKQVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=581530 JGX27_RS10485 WP_043878614.1 2091834..2093195(-) (radA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATCGCTAAGAAAAAAACAACATTTATTTGTCAGGAGTGTGGCTATCATTCTCCGAAATATTTGGGACGTTGTCCGAATTG
TTCGTCTTGGACGTCTTTTGTTGAAGAAGTTGAGGTGCAAGAAGTCAAAAATGCGCGTGTTAGTTTGACGGGTGAAAAGA
GTAAACCGACTAAGTTAAAGGATGTTAGCTCGATTCATTATTCACGCACCAAGACTGGCATGGATGAATTTAACCGCGTG
CTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACGCTTCTTTTGCA
GGTATCTATTCAACTTGCAGATAAGGGAACGGTTCTTTACGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTACGTA
GTGAGCGTCTTGGCGACATTGACAATGAATTTTACCTTTATGCTGAAACGAATATGCAAGCCATTCGCGCACAGATTGAG
CAAATTCAGCCTGATTTCTTGATTATTGACTCGATTCAGACCATTATGAGCCCTGATATTTCTGGGGTTCAAGGGTCGGT
ATCACAAGTACGTGAAGTGACTGCAGAGTTGATGCAACTAGCTAAGACAAATAATATTGCAACCTTTATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCAGGACCGCGCATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAAGGGGAACGT
CATCACACCTTCCGTATTTTACGTGCTGTGAAAAATCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGTCTTGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTAGAAGAACGTTTGGACGGTGCAACGGGGTCAGCTATCG
TGGTTACCATGGAAGGTAGCCGTCCAATTTTGGCGGAAGTCCAAGCTTTGGTAACGCCGACAGTCTTTGGAAATGCTAAA
CGCACCACGACAGGACTGGATTTTAACCGTGTTAGCCTTATTATGGCGGTGCTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATTTGAAATCGGCTGGTGGTGTTAAACTTGATGAGCCAGCGATTGATTTGGCAGTAGCGGTAGCCA
TTGCGTCAAGCTATAAAGAAAAGCCAACAAATCCACAGGAAGCCTTCATCGGTGAAATTGGTTTGACAGGCGAAATTCGT
CGTGTGACACGTATTGAGCAACGTATCAACGAAGCAGCAAAACTTGGTTTTACCAAAGTTTATGCTCCTAAAAACTCCCT
GTCAGGTATTGATATTCCAGACAATATTCAAGTCATTGGTGTGACAACTGTGGGCGAAGTCCTCAAACAAGTTTTTGCGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(72-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.521

100

0.885
  radA Streptococcus pneumoniae D39

88.521

100

0.885
  radA Streptococcus pneumoniae R6

88.521

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.521

100

0.885
  radA Streptococcus mitis SK321

88.521

100

0.885
  radA Streptococcus mitis NCTC 12261

88.3

100

0.883
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62