Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JGX27_RS03685 Genome accession   NZ_CP077423
Coordinates   675685..677487 (+) Length   600 a.a.
NCBI ID   WP_009853777.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 670685..682487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS03660 (JGX27_03660) queA 671341..672369 (-) 1029 WP_009853772.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  JGX27_RS03665 (JGX27_03665) - 672545..673045 (+) 501 WP_009853773.1 VIT1/CCC1 transporter family protein -
  JGX27_RS03670 (JGX27_03670) nagB 673174..673878 (+) 705 WP_013642867.1 glucosamine-6-phosphate deaminase -
  JGX27_RS03675 (JGX27_03675) - 673954..674670 (+) 717 WP_009853775.1 pseudouridine synthase -
  JGX27_RS03680 (JGX27_03680) - 674724..675695 (+) 972 WP_009853776.1 competence protein CoiA family protein -
  JGX27_RS03685 (JGX27_03685) pepF 675685..677487 (+) 1803 WP_009853777.1 oligoendopeptidase F Regulator
  JGX27_RS03690 (JGX27_03690) - 677561..678079 (+) 519 WP_009853778.1 GNAT family N-acetyltransferase -
  JGX27_RS03695 (JGX27_03695) - 678101..678712 (+) 612 WP_009853779.1 HAD-IA family hydrolase -
  JGX27_RS03700 (JGX27_03700) - 678766..679467 (+) 702 WP_009853780.1 O-methyltransferase -
  JGX27_RS03705 (JGX27_03705) - 679536..680642 (+) 1107 WP_009853781.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68898.94 Da        Isoelectric Point: 4.5967

>NTDB_id=581504 JGX27_RS03685 WP_009853777.1 675685..677487(+) (pepF) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MSDNRSHIDEKYQWDLSTVFATDDAWEAELASLDSDLENAKAYKGHLTASSNDLLAITESYLALSRRLEKLYVYASMKND
QDTTVAKYQEYQAKATAIYAKFSEIFAFYEPELMQLSKEAFEDFVAEIPALSAYAHFFEQLFKRQPHVLSQAEEELLAGA
QEIFGAAGETFGLLDNADIIFPIVLDDEGKEIQLTHGNFISLLESKNRDVRKEAYQALYATYEQFQHTYAKTLQTNVKVH
NYEARVHHFKSAREAALSANFIPESVYDTLIETVNANLPLLHRYVELRKKILKLDDLKMYDIHTPLSEMDMSFTYEEALA
KAEDVLAVFGKEYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKSTIFRQAQFAEFEDIIHKADQAGEVLTSDY
LNQLYADLNEKYYGLSKADNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQADIDRYLDYLKAGNSDYPL
NVIKKAGVDMTTSAYLDAAFRIFEERLDELEVLIEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=581504 JGX27_RS03685 WP_009853777.1 675685..677487(+) (pepF) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGTCAGATAATCGTAGTCATATTGATGAAAAATACCAATGGGATTTAAGCACAGTTTTTGCCACAGATGATGCTTGGGA
AGCGGAGCTGGCTAGTCTTGATAGTGATTTAGAAAATGCTAAAGCTTACAAGGGGCATTTGACAGCGTCAAGTAATGATT
TGCTTGCTATTACGGAAAGTTACCTTGCCTTGTCGCGTCGTTTGGAGAAGCTTTATGTTTATGCTTCAATGAAAAACGAC
CAAGATACAACAGTAGCCAAATACCAAGAATACCAAGCTAAAGCAACAGCAATCTATGCCAAGTTTAGTGAAATTTTTGC
TTTTTACGAACCTGAATTGATGCAATTGTCTAAAGAAGCTTTTGAGGATTTCGTGGCAGAAATACCAGCTTTATCTGCTT
ATGCACATTTCTTTGAGCAACTTTTCAAACGTCAACCGCATGTTTTGTCACAGGCTGAGGAAGAATTGTTAGCAGGTGCG
CAAGAAATTTTTGGAGCTGCAGGAGAAACATTTGGGCTTTTGGATAATGCTGACATCATTTTTCCAATCGTTCTAGATGA
TGAGGGCAAAGAAATTCAGCTAACGCATGGTAATTTCATTAGCTTGTTAGAATCAAAAAATCGTGATGTCCGCAAAGAAG
CTTACCAAGCTTTGTATGCAACTTATGAACAATTCCAACACACTTATGCGAAAACCTTGCAAACCAATGTCAAAGTGCAT
AACTATGAAGCGCGTGTTCATCATTTTAAATCAGCGCGTGAGGCAGCGCTTTCGGCTAATTTTATTCCAGAATCTGTTTA
TGATACCTTGATTGAAACGGTCAATGCTAACCTGCCTTTGCTTCATCGCTACGTGGAACTTCGCAAGAAAATCCTTAAAC
TGGATGATTTGAAAATGTACGATATTCATACGCCACTTTCTGAAATGGATATGAGTTTTACCTATGAAGAAGCTTTGGCA
AAAGCTGAAGATGTCTTGGCTGTTTTTGGCAAAGAATATTCTGAGCGTGTTCATCGTGCTTTTACAGAACGCTGGATTGA
CGTCCATGTCAATAAAGGCAAACGCTCTGGTGCTTACTCTGGTGGTTCGTATGATACCAATGCTTTCATGCTGTTAAATT
GGCAAGATACCTTGGATAATTTGTTTACCTTAGTTCACGAAACGGGGCACAGCTTGCATTCGACATTTACACGTGAAAAT
CAACCTTATGTTTATGGAGATTATAGTATTTTCTTGGCAGAAATTGCTTCAACAACTAATGAAAATATTTTGACAGAAAC
ACTTTTGAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCATTATCTTGATGGTTTCAAGAGTACCATTT
TTCGTCAAGCACAATTTGCGGAATTTGAAGATATCATTCATAAGGCAGACCAAGCTGGAGAAGTGTTGACGAGTGATTAC
CTCAACCAACTTTATGCCGACTTAAACGAGAAATATTATGGACTCAGCAAAGCAGACAACCCAGAAATCCAATACGAATG
GGCACGCATTCCGCATTTCTACTACAATTACTATGTTTACCAATACGCCACAGGATTTGCGGCAGCTAGTTATTTAGCTG
ATAAGGTTGTTCACGGTACACAAGCGGATATTGACCGCTACCTTGATTATCTGAAAGCAGGTAATTCTGATTATCCGCTT
AATGTGATCAAAAAAGCTGGTGTGGATATGACAACAAGTGCTTATCTAGACGCTGCTTTCCGAATTTTCGAGGAACGCTT
GGATGAGTTGGAAGTTTTAATTGAAAAAGGAGCACATCTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.333

100

0.703