Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   D8S83_RS04325 Genome accession   NZ_AP018349
Coordinates   880390..881472 (+) Length   360 a.a.
NCBI ID   WP_020977076.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GN1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 875390..886472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8S83_RS04305 - 875760..876830 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  D8S83_RS04310 - 877148..878203 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  D8S83_RS04315 - 878375..879016 (-) 642 WP_000192947.1 YigZ family protein -
  D8S83_RS04320 fakB1 879160..880026 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  D8S83_RS04325 comFA 880390..881472 (+) 1083 WP_020977076.1 DEAD/DEAH box helicase Machinery gene
  D8S83_RS04330 - 881465..882139 (+) 675 WP_001057968.1 ComF family protein -
  D8S83_RS04335 raiA 882200..882772 (+) 573 WP_120173172.1 ribosome-associated translation inhibitor RaiA -
  D8S83_RS04340 secA 883186..885717 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  D8S83_RS04345 - 885759..885851 (+) 93 Protein_815 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42033.55 Da        Isoelectric Point: 9.7563

>NTDB_id=58146 D8S83_RS04325 WP_020977076.1 880390..881472(+) (comFA) [Staphylococcus aureus strain GN1]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=58146 D8S83_RS04325 WP_020977076.1 880390..881472(+) (comFA) [Staphylococcus aureus strain GN1]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACGGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
AATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367

Multiple sequence alignment