Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KGD87_RS33045 Genome accession   NZ_CP077414
Coordinates   8098184..8099551 (-) Length   455 a.a.
NCBI ID   WP_284664917.1    Uniprot ID   -
Organism   Myxococcus sp. SDU36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8093184..8104551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGD87_RS33030 (KGD87_32910) - 8093902..8095692 (+) 1791 WP_284664914.1 methyl-accepting chemotaxis protein -
  KGD87_RS33035 (KGD87_32915) - 8095676..8097169 (-) 1494 WP_284664915.1 HAMP domain-containing sensor histidine kinase -
  KGD87_RS33040 (KGD87_32920) - 8097479..8098030 (+) 552 WP_284664916.1 dihydrofolate reductase family protein -
  KGD87_RS33045 (KGD87_32925) radA 8098184..8099551 (-) 1368 WP_284664917.1 DNA repair protein RadA Machinery gene
  KGD87_RS33050 (KGD87_32930) - 8099735..8100004 (+) 270 WP_284664918.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  KGD87_RS33055 (KGD87_32935) bioB 8100145..8101185 (+) 1041 WP_284664919.1 biotin synthase BioB -
  KGD87_RS33060 (KGD87_32940) bioF 8101193..8102368 (+) 1176 WP_284664920.1 8-amino-7-oxononanoate synthase -
  KGD87_RS33065 (KGD87_32945) bioD 8102361..8103044 (+) 684 WP_284664921.1 dethiobiotin synthase -
  KGD87_RS33070 (KGD87_32950) - 8103177..8103455 (+) 279 WP_013935584.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48286.78 Da        Isoelectric Point: 7.6453

>NTDB_id=581417 KGD87_RS33045 WP_284664917.1 8098184..8099551(-) (radA) [Myxococcus sp. SDU36]
MAKAKTHYTCQACGYKAAKWLGKCPDCGAWSSLMEETDPKADERRPAWGASGGAARPMLLKEVSGETETRRRTGIAEFDR
VLGGGVVSGSIVLLGGDPGIGKSTLLLAALDRLARHGPVLYVSGEESLRQTKMRAERLRVEGDAIHLFAETDAERVLTAT
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLTEPACDLAVCAALVSSLQNRPLDPKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVMPAGSARRLEDAGPKMKVVGVETLGEALVAMFD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=581417 KGD87_RS33045 WP_284664917.1 8098184..8099551(-) (radA) [Myxococcus sp. SDU36]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCGTGTGGATACAAAGCGGCGAAGTGGCTGGGGAAGTGCCCGGACTG
TGGCGCGTGGAGCTCCCTGATGGAGGAGACGGACCCGAAGGCGGATGAACGACGTCCGGCCTGGGGGGCCTCGGGCGGCG
CGGCGCGGCCCATGTTGCTCAAGGAGGTGAGCGGCGAGACGGAGACGCGCCGGCGCACGGGCATCGCCGAGTTCGACCGC
GTGCTGGGCGGCGGCGTGGTGAGTGGCTCCATCGTGCTGCTGGGTGGCGACCCGGGCATCGGCAAGTCCACGCTGTTGCT
GGCGGCGTTGGACAGGCTGGCGCGGCACGGCCCGGTGCTCTACGTCTCCGGGGAAGAGAGCCTGCGGCAGACGAAGATGC
GCGCCGAGCGGCTCCGGGTGGAGGGGGATGCCATCCACCTGTTCGCGGAGACGGACGCGGAGCGGGTGCTGACGGCGACG
GAGGCGTTGAAGCCCCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCCGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCCTACGCGAAGCGCACCGGCGTGCCCACGTTCCTGGTGGGCC
ACGTGACGAAGGAAGGCTCCATCGCGGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCGTTCCGAATCCTGCGCGCGCACAAGAACCGCTTCGGCTCCACGAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGGCGGACCCGTCCGCCCTCTTCCTGTCGGAGCGGCCGGTGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTGAACGGCACGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACGGGCTACGGCACCGCG
CGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAAGAGATTCCGCT
GGTGGGCTGCGACTTGTTCGTCAACGTGGCGGGCGGCATGCAGCTCACGGAGCCGGCGTGCGACCTCGCCGTTTGCGCGG
CGCTGGTGAGCAGCCTCCAGAACCGGCCGTTGGATCCAAAGACGCTGGTGCTCGGTGAAGTGGGCCTCGCGGGAGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCCCGGCTGGCGGAGGCCGCGAAGATGGGCTTCCAGCGCGTGGTGATGCCCGCCGGCAG
CGCGCGGCGGCTGGAGGACGCGGGCCCGAAGATGAAGGTGGTCGGCGTGGAGACGCTCGGCGAGGCGCTGGTCGCGATGT
TTGATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.084

99.78

0.53
  radA Streptococcus mitis NCTC 12261

52.308

100

0.523
  radA Streptococcus mitis SK321

52.193

100

0.523
  radA Streptococcus pneumoniae Rx1

52.088

100

0.521
  radA Streptococcus pneumoniae D39

52.088

100

0.521
  radA Streptococcus pneumoniae R6

52.088

100

0.521
  radA Streptococcus pneumoniae TIGR4

52.088

100

0.521