Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   I6L88_RS08160 Genome accession   NZ_CP077404
Coordinates   1654034..1654747 (+) Length   237 a.a.
NCBI ID   WP_002274633.1    Uniprot ID   -
Organism   Streptococcus mutans strain FDAARGOS 1458     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1649034..1659747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L88_RS08145 (I6L88_08145) - 1649815..1650153 (-) 339 Protein_1592 lipase -
  I6L88_RS08150 (I6L88_08150) treC 1650239..1651867 (-) 1629 WP_002279989.1 alpha,alpha-phosphotrehalase -
  I6L88_RS08155 (I6L88_08155) treP 1651893..1653860 (-) 1968 WP_002279988.1 PTS system trehalose-specific EIIBC component -
  I6L88_RS08160 (I6L88_08160) treR 1654034..1654747 (+) 714 WP_002274633.1 trehalose operon repressor Regulator
  I6L88_RS08165 (I6L88_08165) - 1654874..1655011 (+) 138 WP_002279987.1 hypothetical protein -
  I6L88_RS08170 (I6L88_08170) dexA 1655093..1657645 (-) 2553 WP_080036121.1 dextranase DexA -
  I6L88_RS08175 (I6L88_08175) dtd 1658133..1658579 (-) 447 WP_002269409.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27793.15 Da        Isoelectric Point: 9.7425

>NTDB_id=581330 I6L88_RS08160 WP_002274633.1 1654034..1654747(+) (treR) [Streptococcus mutans strain FDAARGOS 1458]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQIYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIVDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=581330 I6L88_RS08160 WP_002274633.1 1654034..1654747(+) (treR) [Streptococcus mutans strain FDAARGOS 1458]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGATCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTGTTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATTACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.578

100

0.996