Detailed information    

insolico Bioinformatically predicted

Overview


Name   oppD   Type   Regulator
Locus tag   I6L88_RS07695 Genome accession   NZ_CP077404
Coordinates   1575653..1576705 (-) Length   350 a.a.
NCBI ID   WP_002268461.1    Uniprot ID   A0AAX1K1R1
Organism   Streptococcus mutans strain FDAARGOS 1458     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1570653..1581705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L88_RS07675 (I6L88_07675) ptcA 1571048..1572067 (-) 1020 WP_002282737.1 putrescine carbamoyltransferase -
  I6L88_RS07680 (I6L88_07680) - 1572306..1573271 (+) 966 WP_002263993.1 LuxR C-terminal-related transcriptional regulator -
  I6L88_RS07685 (I6L88_07685) - 1573488..1574090 (-) 603 WP_002269742.1 nitroreductase family protein -
  I6L88_RS07690 (I6L88_07690) amiF 1574734..1575660 (-) 927 WP_002280001.1 ABC transporter ATP-binding protein Regulator
  I6L88_RS07695 (I6L88_07695) oppD 1575653..1576705 (-) 1053 WP_002268461.1 ABC transporter ATP-binding protein Regulator
  I6L88_RS07700 (I6L88_07700) - 1576715..1577746 (-) 1032 WP_002280002.1 ABC transporter permease -
  I6L88_RS07705 (I6L88_07705) - 1577757..1578671 (-) 915 WP_002262739.1 ABC transporter permease -
  I6L88_RS07710 (I6L88_07710) - 1578777..1580426 (-) 1650 WP_002280003.1 peptide ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 350 a.a.        Molecular weight: 39204.71 Da        Isoelectric Point: 5.5768

>NTDB_id=581327 I6L88_RS07695 WP_002268461.1 1575653..1576705(-) (oppD) [Streptococcus mutans strain FDAARGOS 1458]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWEKWKSLQGEKHND

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=581327 I6L88_RS07695 WP_002268461.1 1575653..1576705(-) (oppD) [Streptococcus mutans strain FDAARGOS 1458]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACACTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTAACCACAC
GAACTTTAATGGGGTTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACGCAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTCAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCATCAGTGGTCAGGCGGTATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTATTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATTCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGGAAAAATGGAAGAGCTTACAGGGAGAAAA
GCATAATGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

99.429

100

0.994

  amiE Streptococcus salivarius strain HSISS4

55.014

99.714

0.549

  amiE Streptococcus thermophilus LMG 18311

54.728

99.714

0.546

  amiE Streptococcus thermophilus LMD-9

54.728

99.714

0.546