Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   STO1_RS09530 Genome accession   NZ_AP018338
Coordinates   1855573..1856934 (-) Length   453 a.a.
NCBI ID   WP_081102821.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1850573..1861934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS09505 (STO1_018020) - 1851344..1851781 (-) 438 WP_061588468.1 CoA-binding protein -
  STO1_RS09510 (STO1_018030) srtB 1851916..1852749 (-) 834 WP_096422956.1 class B sortase, LPKTxAVK-specific -
  STO1_RS09515 (STO1_018040) abpA 1852835..1853482 (-) 648 WP_061588466.1 amylase-binding adhesin AbpA -
  STO1_RS09520 (STO1_018050) - 1853823..1854791 (-) 969 WP_061588465.1 ribose-phosphate diphosphokinase -
  STO1_RS09525 (STO1_018060) - 1855006..1855500 (-) 495 WP_172843656.1 beta-class carbonic anhydrase -
  STO1_RS09530 (STO1_018070) radA 1855573..1856934 (-) 1362 WP_081102821.1 DNA repair protein RadA Machinery gene
  STO1_RS09535 (STO1_018080) - 1856931..1857398 (-) 468 WP_061588464.1 cysteine hydrolase family protein -
  STO1_RS09540 (STO1_018090) - 1857408..1857851 (-) 444 WP_061588463.1 dUTP diphosphatase -
  STO1_RS09550 (STO1_018100) tadA 1858038..1858505 (-) 468 WP_061588462.1 tRNA adenosine(34) deaminase TadA -
  STO1_RS09555 (STO1_018110) - 1858705..1859991 (-) 1287 WP_045616593.1 adenylosuccinate synthase -
  STO1_RS09945 (STO1_018120) comW 1860236..1860469 (-) 234 WP_045616591.1 sigma(X)-activator ComW Regulator

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49387.86 Da        Isoelectric Point: 6.1885

>NTDB_id=58127 STO1_RS09530 WP_081102821.1 1855573..1856934(-) (radA) [Streptococcus oralis subsp. tigurinus strain osk_001]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEIAEVKNARVSLAGDKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=58127 STO1_RS09530 WP_081102821.1 1855573..1856934(-) (radA) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATAGCTAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCACCTAAGTATCTAGGGCGCTGTCCCAACTG
TGGATCTTGGTCTTCTTTTGTAGAAGAGGTAGAGATTGCAGAGGTCAAGAATGCGCGTGTGTCCTTGGCAGGTGATAAAA
CCAAGCCTATGAAACTGGCTGAGGTAACTTCAATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTC
CTTGGAGGCGGAGTGGTTCCAGGAAGTCTCGTCCTAATTGGGGGAGATCCTGGAATCGGAAAATCAACTCTTCTCCTACA
AGTTTCAACCCAGTTATCTCAAGTGGGTACGGTTCTATACGTCAGTGGGGAGGAGTCTGCCCAACAGATTAAGCTACGGG
CAGAGCGCTTGGGGGATATTGATAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGTGCAGAGGTGGAG
CGCATCCAACCAGACTTTCTTATTATCGACTCTATCCAGACTATTATGTCTCCTGAGATTTCAGGGGTACAGGGGTCTGT
TTCTCAGGTGCGTGAGGTGACAGCTGAGCTCATGCAGTTGGCTAAGACCAATAACATCGCTATCTTTATCGTAGGGCATG
TGACAAAGGAAGGTACTCTGGCCGGCCCGCGTATGTTGGAGCATATGGTAGATACAGTGCTTTACTTTGAAGGGGAACGC
CACCATACCTTCCGCATCTTGAGAGCAGTCAAAAACCGCTTTGGTTCCACTAATGAGATTGGCATCTTTGAGATGCAGTC
AGGTGGGTTGGTTGAGGTGCTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGACGGGGCGACTGGTTCATCCATCG
TGGTAACTATGGAAGGGACACGTCCAATTCTTGCTGAAGTGCAAGCCTTGGTGACACCGACTATGTTTGGGAATGCCAAG
CGCACGACGACAGGGCTTGATTTCAATCGTGCTAGTTTGATTATGGCTGTTTTGGAAAAACGTGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGTGGTGTCAAATTGGATGAACCTGCCATTGATTTAGCAGTTGCGGTTGCTA
TTGCTTCGAGCTATAAAGACAAGCCAACCAATCCTCAGGAATGTTTTGTGGGTGAACTGGGCTTGACCGGAGAAATTCGA
CGCGTGAATCGTATCGAACAACGTATCAATGAAGCGGCAAAATTGGGCTTTACCAAGATTTATGTACCCAAGAATTCCTT
GACAGGAATCACTCCACCCAAGGAAATTGAGGTCATTGGTGTGACGACTATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

98.896

100

0.989
  radA Streptococcus mitis SK321

98.896

100

0.989
  radA Streptococcus pneumoniae Rx1

98.896

100

0.989
  radA Streptococcus pneumoniae D39

98.896

100

0.989
  radA Streptococcus pneumoniae R6

98.896

100

0.989
  radA Streptococcus pneumoniae TIGR4

98.896

100

0.989
  radA/sms Bacillus subtilis subsp. subtilis str. 168

63.355

100

0.634

Multiple sequence alignment