Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   STO1_RS09490 Genome accession   NZ_AP018338
Coordinates   1848216..1848986 (-) Length   256 a.a.
NCBI ID   WP_096422951.1    Uniprot ID   A0A426FUE7
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1843216..1853986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS09460 (STO1_017920) - 1845740..1845928 (-) 189 WP_061588472.1 hypothetical protein -
  STO1_RS09465 (STO1_017930) - 1845967..1846137 (-) 171 WP_007522555.1 H354_08695 family bacteriocin-like peptide -
  STO1_RS09475 (STO1_017950) - 1846369..1846545 (-) 177 WP_007522553.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  STO1_RS09775 (STO1_017960) - 1846828..1847004 (-) 177 WP_021164730.1 hypothetical protein -
  STO1_RS09480 (STO1_017970) - 1846985..1847221 (-) 237 WP_007522551.1 acyl carrier protein -
  STO1_RS09485 (STO1_017980) plsX 1847227..1848219 (-) 993 WP_096422949.1 phosphate acyltransferase PlsX -
  STO1_RS09490 (STO1_017990) recO 1848216..1848986 (-) 771 WP_096422951.1 DNA repair protein RecO Machinery gene
  STO1_RS09495 (STO1_018000) - 1848983..1850152 (-) 1170 WP_096422953.1 pyridoxal phosphate-dependent aminotransferase -
  STO1_RS09500 (STO1_018010) - 1850304..1851314 (+) 1011 WP_096422955.1 YeiH family protein -
  STO1_RS09505 (STO1_018020) - 1851344..1851781 (-) 438 WP_061588468.1 CoA-binding protein -
  STO1_RS09510 (STO1_018030) srtB 1851916..1852749 (-) 834 WP_096422956.1 class B sortase, LPKTxAVK-specific -
  STO1_RS09515 (STO1_018040) abpA 1852835..1853482 (-) 648 WP_061588466.1 amylase-binding adhesin AbpA -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29889.29 Da        Isoelectric Point: 4.9119

>NTDB_id=58126 STO1_RS09490 WP_096422951.1 1848216..1848986(-) (recO) [Streptococcus oralis subsp. tigurinus strain osk_001]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFTFLQKTLELMEEGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRIG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPEIKQDLRKFIDQIYEEYVGIHLKSKKF
IDSLADWGQLLKEEDK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=58126 STO1_RS09490 WP_096422951.1 1848216..1848986(-) (recO) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTCTACAATCGTAATTTTCGTGAGGATGACAAGTTAGTCAAGATTTT
TACCGAGCAGGCTGGCAAGCGCATGTTTTTCGTCAAACACGCTGGTCAGTCCAAACTAGCTCCGGTTATTCAGCCCTTGG
TGTTGGCGCGATTTCTCTTACGAATCAATGATGATGGGCTCAGCTATATCGAGGACTACCATGAGGTGATGACCTTTCCT
AAGATTAATAGTGATCTCTTTGTCATGGCTTATGCGACCTATGTTGCTGCTCTTGCAGATGCTAGTTTGCAGGATAACCA
GCAGGATGCTCCCTTGTTTACTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGAGGGTTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATCTTGACCCGATTTGGAATTAGTCTCAATTTTAATGAGTGTGTCTTTTGCCATCGGATCGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGCCCAGAGCATTATCATGAAGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCTTATCTACTCAATCAATTTCAAGCCATTGATTTTGAGACCTTAGAGACCATTTCGCTCAAGCCCG
AAATCAAGCAAGACTTGCGCAAGTTTATAGACCAAATCTACGAAGAGTATGTTGGAATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAGACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A426FUE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

95.703

100

0.957

Multiple sequence alignment