Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6L40_RS04085 Genome accession   NZ_CP077401
Coordinates   861914..863353 (+) Length   479 a.a.
NCBI ID   WP_071913324.1    Uniprot ID   A0AAQ0J2E3
Organism   Aeromonas sp. FDAARGOS 1410     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 856914..868353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L40_RS04055 (I6L40_04055) mlaF 857493..858293 (-) 801 WP_216995031.1 phospholipid ABC transporter ATP-binding protein MlaF -
  I6L40_RS04060 (I6L40_04060) - 858501..859496 (+) 996 WP_041210120.1 KpsF/GutQ family sugar-phosphate isomerase -
  I6L40_RS04065 (I6L40_04065) kdsC 859496..860050 (+) 555 WP_033115461.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  I6L40_RS04070 (I6L40_04070) lptC 860047..860607 (+) 561 WP_071913323.1 LPS export ABC transporter periplasmic protein LptC -
  I6L40_RS04075 (I6L40_04075) lptA 860594..861121 (+) 528 WP_041210123.1 lipopolysaccharide transport periplasmic protein LptA -
  I6L40_RS04080 (I6L40_04080) lptB 861125..861850 (+) 726 WP_033115458.1 LPS export ABC transporter ATP-binding protein -
  I6L40_RS04085 (I6L40_04085) rpoN/rpoN1 861914..863353 (+) 1440 WP_071913324.1 RNA polymerase factor sigma-54 Machinery gene
  I6L40_RS04090 (I6L40_04090) hpf 863375..863662 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  I6L40_RS04095 (I6L40_04095) ptsN 863665..864111 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6L40_RS04100 (I6L40_04100) rapZ 864157..865023 (+) 867 WP_071913325.1 RNase adapter RapZ -
  I6L40_RS04105 (I6L40_04105) npr 865044..865316 (+) 273 WP_033115454.1 PTS phosphocarrier protein NPr -
  I6L40_RS04110 (I6L40_04110) - 865326..867230 (-) 1905 WP_216995032.1 transcription antiterminator -
  I6L40_RS04115 (I6L40_04115) - 867338..868078 (-) 741 WP_201968057.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53886.83 Da        Isoelectric Point: 4.3493

>NTDB_id=581243 I6L40_RS04085 WP_071913324.1 861914..863353(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1410]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLEQEESEVQETAPQEAIDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQTAVSSDEVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLEQYAPETPWLNEAKEVILEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKRQNRWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=581243 I6L40_RS04085 WP_071913324.1 861914..863353(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1410]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCTCTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGAAAGCAATCCTCTGCTGGAGCAGGAAGAGAGCGAAG
TGCAGGAGACTGCCCCGCAAGAGGCCATCGATGCCAGCCAGCTCGACTCCAGCGATGCCATGGCTCAGGAGCAGATGCCG
GACGAGTTGCCGGTTGATACCACTTGGGACGAGGTTTACTCCGCCGGTACCGCCCAGAGCGCAGGCCCGATCCACGACGG
TGAAGACAGCGTCTATCAGGGCGAGACCACCGAAAACCTGCAGGACTATCTGCTGTGGCAGATGCGGCTCACGCCGTTTA
GCGATGTCGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTAGCGCTGGAGGAT
ATCCAGACCGCCGTCAGCAGTGACGAGGTTGAGGTCGAGCTCGACGAGGTGGAGGCTGTCCTCAAGCGGGTGCAGCATTT
TGACCCGGTCGGTATCGCCGCCCGTTCGGTGCAGGAGTGCCTGCTTATCCAGCTGGAGCAGTATGCCCCCGAGACCCCCT
GGCTCAACGAAGCCAAAGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAACCGCGATTATCGTACTCTGGCCCGCAAA
ACCCGCCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTTCTGGAGCCGCGCCCCGGCAATGGCATTAT
CCAGAGCGACTCCCAGTATGTGATCCCCGATGTTTCGGTGGTAAAGCGCCAGAACCGCTGGGTGGTGGAGCTCAACCCCG
ATTCCGCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGCTCCCATTTGCAGGAAGCAAAGTGGTTCATCAAGAGCCTTGAGAGCCGCAACGATACCCTGCTGAAAGTAGCCAG
CTGTATTGTCGAGCAGCAGCAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCATGAGTCGACCATCTCCCGGGTGACCACCCAGAAATACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
AAAGCTGGTGACGGCAGAGAATCCTGCCAAACCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCTAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.205

100

0.482