Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6L37_RS06175 Genome accession   NZ_CP077399
Coordinates   1271694..1273133 (+) Length   479 a.a.
NCBI ID   WP_216993546.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1407     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1266694..1278133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L37_RS06145 (I6L37_06145) mlaF 1267271..1268071 (-) 801 WP_026456358.1 phospholipid ABC transporter ATP-binding protein MlaF -
  I6L37_RS06150 (I6L37_06150) - 1268279..1269274 (+) 996 WP_216993544.1 KpsF/GutQ family sugar-phosphate isomerase -
  I6L37_RS06155 (I6L37_06155) kdsC 1269274..1269828 (+) 555 WP_216993545.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  I6L37_RS06160 (I6L37_06160) lptC 1269825..1270385 (+) 561 WP_026456113.1 LPS export ABC transporter periplasmic protein LptC -
  I6L37_RS06165 (I6L37_06165) lptA 1270372..1270899 (+) 528 WP_026456112.1 lipopolysaccharide transport periplasmic protein LptA -
  I6L37_RS06170 (I6L37_06170) lptB 1270903..1271628 (+) 726 WP_026456111.1 LPS export ABC transporter ATP-binding protein -
  I6L37_RS06175 (I6L37_06175) rpoN/rpoN1 1271694..1273133 (+) 1440 WP_216993546.1 RNA polymerase factor sigma-54 Machinery gene
  I6L37_RS06180 (I6L37_06180) hpf 1273155..1273442 (+) 288 WP_216993547.1 ribosome hibernation promoting factor -
  I6L37_RS06185 (I6L37_06185) ptsN 1273445..1273891 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6L37_RS06190 (I6L37_06190) rapZ 1273937..1274803 (+) 867 WP_042070881.1 RNase adapter RapZ -
  I6L37_RS06195 (I6L37_06195) npr 1274824..1275096 (+) 273 WP_026456107.1 PTS phosphocarrier protein NPr -
  I6L37_RS06200 (I6L37_06200) degS 1275218..1276321 (-) 1104 WP_026456106.1 outer membrane-stress sensor serine endopeptidase DegS -
  I6L37_RS06205 (I6L37_06205) - 1276412..1277773 (-) 1362 WP_216993548.1 Do family serine endopeptidase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54024.82 Da        Isoelectric Point: 4.3230

>NTDB_id=581218 I6L37_RS06175 WP_216993546.1 1271694..1273133(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1407]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSSLELQQEIQQALENNPLLEQEESEVQETSPQDQVDASQLDSSDAMAQDQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGDDTVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSDEVEVELDEIEVVLKRVQHFDPVGIAARSVQECLLIQLEQYDTETPWISEAKEVIQEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKRQNRWVVELNPDSSPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=581218 I6L37_RS06175 WP_216993546.1 1271694..1273133(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1407]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAATCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCTCTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAATCCCCTGCTGGAGCAGGAAGAGAGCGAGG
TGCAGGAGACATCCCCGCAAGATCAGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAGTTGCCGGTGGATACGACCTGGGACGAGGTCTATTCCGCGGGGACGGCCCAGAGTGCCGGACCCATCCATGATGG
AGATGACACCGTCTACCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCCTCACCCCGTTCA
GCGATGTGGATGCCGCCATCGCGCTTGCCATCATAGATGCCATCGACGAATCCGGTTATCTGACTGTGTCGCTGGAAGAT
ATCCAGGCGGCGGTGAGCAGCGACGAAGTGGAGGTCGAACTCGATGAAATCGAGGTCGTGCTCAAGCGGGTGCAACACTT
CGATCCCGTGGGTATCGCAGCTCGTTCGGTACAGGAGTGCCTGCTGATCCAGCTGGAGCAGTACGACACTGAGACTCCCT
GGATCAGTGAGGCCAAGGAGGTGATCCAGGAGCACATGGATCTGCTCGGCAATCGCGATTACCGCACCCTGGCGCGCAAG
ACTCGGCTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGTTGGAGCCACGGCCGGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCGGACGTCTCCGTAGTCAAACGGCAGAATCGCTGGGTGGTGGAACTCAATCCTG
ATTCATCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCTATGGCACGTAACGCCCGTAGCAGCACGGATACCCAGTTT
ATCCGTTCCCACTTGCAGGAAGCAAAGTGGTTCATCAAGAGCCTTGAGAGCCGCAACGACACCCTGTTGAAAGTGGCCAG
CTGCATCGTCGAGCAGCAACAGGGTTTTTTCGAATATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAACGATATCGCCG
AAGCGGTGGAGATGCATGAGTCGACCATCTCCCGTGTAACAACCCAGAAATACATGCATACCCCCCGCGGTATTTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAATACAGAAGGAGGAGGAGAGTGCTCATCGACCGCAATCCGTGCGCTCATCAA
GAAGCTGGTGACGGCGGAGAACCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCTAGACGCACGATCGCTAAGTACCGCGAATCCCTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.882

100

0.489