Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   I6L25_RS17320 Genome accession   NZ_CP077398
Coordinates   3703089..3703562 (+) Length   157 a.a.
NCBI ID   WP_016803890.1    Uniprot ID   A0A1V0YNQ0
Organism   Acinetobacter nosocomialis strain FDAARGOS 1395     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3698089..3708562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L25_RS17295 (I6L25_17295) - 3698552..3700657 (-) 2106 WP_004711681.1 RelA/SpoT family protein -
  I6L25_RS17300 (I6L25_17300) - 3700697..3700828 (-) 132 WP_102990545.1 hypothetical protein -
  I6L25_RS17305 (I6L25_17305) rpoZ 3700867..3701145 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  I6L25_RS17310 (I6L25_17310) gmk 3701218..3701847 (-) 630 WP_002051739.1 guanylate kinase -
  I6L25_RS17315 (I6L25_17315) ispH 3701970..3702920 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L25_RS17320 (I6L25_17320) fimU 3703089..3703562 (+) 474 WP_016803890.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I6L25_RS17325 (I6L25_17325) pilV 3703556..3704116 (+) 561 WP_080631582.1 type IV pilus modification protein PilV Machinery gene
  I6L25_RS17330 (I6L25_17330) pilW 3704116..3705114 (+) 999 WP_004711684.1 PilW family protein Machinery gene
  I6L25_RS17335 (I6L25_17335) pilX 3705111..3705926 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6L25_RS18535 - 3705926..3706111 (+) 186 Protein_3392 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16856.44 Da        Isoelectric Point: 9.3359

>NTDB_id=581198 I6L25_RS17320 WP_016803890.1 3703089..3703562(+) (fimU) [Acinetobacter nosocomialis strain FDAARGOS 1395]
MRGITPQEGFTLVELIVTIAVMAIIAMMAAPSMSNLLESKRLDTNQRDLISTLSEAKSQAVLGRQNVSVNLNSAASNTAT
LLNWQPTSNNTLTLKNIAADNTQSSLAITTLTFNANGVVSNITQDALISICNSRINKKKNFILTKLGALVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=581198 I6L25_RS17320 WP_016803890.1 3703089..3703562(+) (fimU) [Acinetobacter nosocomialis strain FDAARGOS 1395]
ATGAGGGGAATTACTCCGCAAGAAGGGTTCACCTTAGTGGAACTCATCGTAACAATTGCAGTCATGGCTATTATTGCAAT
GATGGCTGCGCCGTCTATGTCAAATTTATTAGAAAGTAAACGTTTAGATACTAATCAAAGAGATTTAATTAGCACTCTAT
CTGAGGCGAAAAGTCAGGCTGTGCTTGGTCGTCAGAATGTTTCAGTTAATTTGAATTCAGCGGCTTCTAATACGGCCACT
TTATTAAATTGGCAACCTACTTCTAACAACACCCTAACGCTAAAAAATATAGCTGCTGATAATACCCAAAGTTCTTTAGC
TATCACTACTTTAACATTTAACGCAAATGGAGTTGTGAGTAATATTACTCAGGATGCACTTATATCTATTTGTAATTCAA
GAATAAATAAAAAGAAAAATTTTATACTTACAAAACTTGGAGCTTTGGTTTTTAAAGCTGAGGAGACATGCTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-136)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0YNQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

85.987

100

0.86