Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   I6L25_RS13865 Genome accession   NZ_CP077398
Coordinates   2959110..2961338 (+) Length   742 a.a.
NCBI ID   WP_004710776.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS 1395     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2954110..2966338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L25_RS13835 (I6L25_13835) lnt 2954146..2955705 (+) 1560 WP_002156963.1 apolipoprotein N-acyltransferase -
  I6L25_RS13840 (I6L25_13840) - 2955707..2956045 (-) 339 WP_004710771.1 tRNA-binding protein -
  I6L25_RS13845 (I6L25_13845) - 2956286..2956546 (+) 261 WP_004710772.1 DUF2798 domain-containing protein -
  I6L25_RS13850 (I6L25_13850) - 2956607..2956951 (-) 345 WP_004710773.1 hypothetical protein -
  I6L25_RS13855 (I6L25_13855) gspG 2957217..2957732 (-) 516 WP_004710774.1 type II secretion system major pseudopilin GspG -
  I6L25_RS13860 (I6L25_13860) gspF 2957756..2958961 (-) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  I6L25_RS13865 (I6L25_13865) priA 2959110..2961338 (+) 2229 WP_004710776.1 primosomal protein N' Machinery gene
  I6L25_RS13870 (I6L25_13870) - 2961414..2963255 (+) 1842 WP_004710778.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  I6L25_RS13875 (I6L25_13875) - 2963421..2964296 (+) 876 WP_004710781.1 Hsp33 family molecular chaperone HslO -
  I6L25_RS13880 (I6L25_13880) - 2964433..2965044 (+) 612 WP_004710783.1 LysE family translocator -
  I6L25_RS13885 (I6L25_13885) - 2965194..2966156 (+) 963 WP_004710785.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83859.72 Da        Isoelectric Point: 8.6657

>NTDB_id=581179 I6L25_RS13865 WP_004710776.1 2959110..2961338(+) (priA) [Acinetobacter nosocomialis strain FDAARGOS 1395]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQAGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGGIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAQRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=581179 I6L25_RS13865 WP_004710776.1 2959110..2961338(+) (priA) [Acinetobacter nosocomialis strain FDAARGOS 1395]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCGGCACAATATTACCAATTTCCGATTGGTGA
GGTCATGCAAACTGCTTTACCTGCGTTATTACGTCAGGGTAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGTTGAAGCTCTGCTAAAACGCTCAATCAAACAACAAGACGCTTATCAAATTTTAAAATTACACCCTGCC
GGAACCACAGAAAATATTCTTAATTTGAGTGGTGTAGAAACTGCGACACTTAAAGCACTTCAAAAGAAAGGACTGGTAGA
CTGTACGCTTGAGCCACATGACTTTAGCCCAGCACCCGTACAATTGGCTCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCATTAATGCACAGCATCAATATCAAGCGTTTTTATTAGATGGCTTAACCGGAAGTGGTAAA
ACCGAAGTTTACCTGCACATCATGCATGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTTCCTGAAATTGGTTT
AACCCCTCAAACCATTTCACGCTTTAAATCTCGTTTTAACTGTGACATTGCTTTATTACATTCGGGCTTAAATGACTCTA
AACGCCTACAAGCCTGGCAACAAGCACAGGCTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTTATCATTTTAGATGAAGAGCACGATCTGTCTTATAAACAACAAGAAGGCTTTCGTTACCATGC
CCGTGATGTCGCGCTTTACCGCGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCAGCAACCCCAAGCATTGATAGCT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTTTAATCGAGCAAATTAAAAATACCCTAGCAAG
AAAAGAACAAGTTCTAATCTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTATTTACATTGTCACCACTGCGGCACGGTT
CATCGCTTGCCAGACCACTGCCCTGAATGTCAGCAAAAGAGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTTCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTAGGTAGCTGGCAAA
AAATTTATGATCGCATTCAGCAAAATAAACCTTCGATTTTGCTTGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCAGGTTTATTGAGTGTCGATATTCGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAAGGCCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACGCTAATTGAAAAAGATTATCGGGCAGTCGCAAAGCAAACATTGGCTGAGCGTAAAGTTGCTTTA
CTGCCGCCTTATCGTTATGCAGTTTTAATTCGTGCTGAGTCAAAAGATCGTGACTATACTTTACATTTTTTAAATGAAGC
TGCTGAGCAACTTCGCCAAATTGCAGGTGGTATTGTTGATATTTGGGGGCCAATTCCCGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCCCATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTCCATGCGCAAAGACAGCATCAACTCAGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.844

100

0.978