Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   I6L25_RS07500 Genome accession   NZ_CP077398
Coordinates   1616448..1616828 (-) Length   126 a.a.
NCBI ID   WP_004709113.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS 1395     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1611448..1621828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L25_RS07475 (I6L25_07475) - 1611909..1613033 (-) 1125 WP_006580787.1 enoyl-CoA hydratase/isomerase family protein -
  I6L25_RS07480 (I6L25_07480) ung 1613030..1613743 (-) 714 WP_004709105.1 uracil-DNA glycosylase -
  I6L25_RS07485 (I6L25_07485) - 1613794..1614390 (-) 597 WP_004709107.1 6-pyruvoyl trahydropterin synthase family protein -
  I6L25_RS07490 (I6L25_07490) gspK 1614620..1615579 (-) 960 WP_004709110.1 type II secretion system minor pseudopilin GspK -
  I6L25_RS07495 (I6L25_07495) xcpW 1615579..1616448 (-) 870 WP_004709112.1 type II secretion system minor pseudopilin GspJ Machinery gene
  I6L25_RS07500 (I6L25_07500) xcpV 1616448..1616828 (-) 381 WP_004709113.1 type II secretion system minor pseudopilin GspI Machinery gene
  I6L25_RS07505 (I6L25_07505) - 1616818..1617369 (-) 552 WP_004709114.1 type II secretion system protein -
  I6L25_RS07510 (I6L25_07510) - 1617379..1617987 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  I6L25_RS07515 (I6L25_07515) - 1618025..1618798 (-) 774 WP_004709116.1 TatD family hydrolase -
  I6L25_RS07520 (I6L25_07520) - 1618816..1619157 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  I6L25_RS07525 (I6L25_07525) - 1619170..1620150 (-) 981 WP_004709118.1 DNA polymerase III, delta' subunit -
  I6L25_RS07530 (I6L25_07530) kdsB 1620162..1620923 (-) 762 WP_004709120.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13962.16 Da        Isoelectric Point: 9.4463

>NTDB_id=581167 I6L25_RS07500 WP_004709113.1 1616448..1616828(-) (xcpV) [Acinetobacter nosocomialis strain FDAARGOS 1395]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=581167 I6L25_RS07500 WP_004709113.1 1616448..1616828(-) (xcpV) [Acinetobacter nosocomialis strain FDAARGOS 1395]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTAGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGCACTCAAAGTAAGCAAGTAACTTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAGTTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

96.825

100

0.968