Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6L39_RS08460 Genome accession   NZ_CP077395
Coordinates   1782665..1784104 (+) Length   479 a.a.
NCBI ID   WP_042074418.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1409     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1777665..1789104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L39_RS08430 (I6L39_08430) mlaF 1778243..1779043 (-) 801 WP_042074410.1 phospholipid ABC transporter ATP-binding protein MlaF -
  I6L39_RS08435 (I6L39_08435) - 1779250..1780245 (+) 996 WP_042074411.1 KpsF/GutQ family sugar-phosphate isomerase -
  I6L39_RS08440 (I6L39_08440) kdsC 1780245..1780799 (+) 555 WP_042074412.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  I6L39_RS08445 (I6L39_08445) lptC 1780796..1781356 (+) 561 WP_042074414.1 LPS export ABC transporter periplasmic protein LptC -
  I6L39_RS08450 (I6L39_08450) lptA 1781343..1781861 (+) 519 WP_042074415.1 lipopolysaccharide transport periplasmic protein LptA -
  I6L39_RS08455 (I6L39_08455) lptB 1781874..1782599 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  I6L39_RS08460 (I6L39_08460) rpoN/rpoN1 1782665..1784104 (+) 1440 WP_042074418.1 RNA polymerase factor sigma-54 Machinery gene
  I6L39_RS08465 (I6L39_08465) hpf 1784125..1784412 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  I6L39_RS08470 (I6L39_08470) ptsN 1784415..1784861 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6L39_RS08475 (I6L39_08475) rapZ 1784902..1785768 (+) 867 WP_042074423.1 RNase adapter RapZ -
  I6L39_RS08480 (I6L39_08480) npr 1785785..1786057 (+) 273 WP_042074425.1 PTS phosphocarrier protein NPr -
  I6L39_RS08485 (I6L39_08485) - 1786072..1787976 (-) 1905 WP_216991541.1 transcription antiterminator -
  I6L39_RS08490 (I6L39_08490) - 1788083..1788823 (-) 741 WP_216991542.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53715.54 Da        Isoelectric Point: 4.3778

>NTDB_id=581145 I6L39_RS08460 WP_042074418.1 1782665..1784104(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1409]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSEAEAQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPELPWLNEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=581145 I6L39_RS08460 WP_042074418.1 1782665..1784104(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1409]
ATGAAGCCGACATTACAGTTGCGCCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTGAGGCAGAGGCACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GACGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCCGCCGGTACGGCCCAGAGCGCAGGGCCCATTCACGACGG
GGAGGACAGCATCTATCAGGGGGAAACCACCGAAAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCCTTCA
GCGACGTGGATGCGGCAATCGCGCTGGCCATCATCGATGCCATCGACGAATCCGGCTATCTGACGGCCACCCTCGAAGAT
ATTCAGGCTGCAGTCAGCAGCGAAGAGGTAGAAGTCGAACTGGATGAGGTCGAAGCGGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTACAGGAGTGCCTGCTTATCCAGCTCGGCCAGTATTCGCCTGAATTGCCCT
GGCTCAACGAGGCCAGGGAGGTGATCCGCGAGCACATGGATCTGCTCGGCAATCGCGACTATCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAACCCAGGCCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGGAGCAAGTGGGTGGTGGAGCTCAATCCGG
ACTCGGCACCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGTACGGATACCCAGTTC
ATCCGTTCCCATTTGCAGGAGGCCAAGTGGTTCATCAAAAGTCTGGAGAGCCGCAACGACACACTGCTCAAGGTGGCCAG
CTGTATCGTCGAGCAGCAGCAGGGCTTCTTCGAATATGGCGAAGAGGCGATGAAACCCATGGTGCTCAATGACATCGCCG
AGGCCGTGGAGATGCATGAGTCGACCATTTCCAGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGTGCGCTCATCAA
GAAGCTGGTGACGGCGGAGAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.58

100

0.484