Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6L38_RS21385 Genome accession   NZ_CP077394
Coordinates   4617674..4619113 (+) Length   479 a.a.
NCBI ID   WP_017784940.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1408     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4612674..4624113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L38_RS21355 (I6L38_21355) mlaF 4613251..4614051 (-) 801 WP_216988912.1 phospholipid ABC transporter ATP-binding protein MlaF -
  I6L38_RS21360 (I6L38_21360) - 4614259..4615254 (+) 996 WP_005305976.1 KpsF/GutQ family sugar-phosphate isomerase -
  I6L38_RS21365 (I6L38_21365) kdsC 4615254..4615808 (+) 555 WP_017766397.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  I6L38_RS21370 (I6L38_21370) lptC 4615805..4616365 (+) 561 WP_216988913.1 LPS export ABC transporter periplasmic protein LptC -
  I6L38_RS21375 (I6L38_21375) lptA 4616352..4616879 (+) 528 WP_010635928.1 lipopolysaccharide transport periplasmic protein LptA -
  I6L38_RS21380 (I6L38_21380) lptB 4616883..4617608 (+) 726 WP_005305964.1 LPS export ABC transporter ATP-binding protein -
  I6L38_RS21385 (I6L38_21385) rpoN/rpoN1 4617674..4619113 (+) 1440 WP_017784940.1 RNA polymerase factor sigma-54 Machinery gene
  I6L38_RS21390 (I6L38_21390) hpf 4619135..4619422 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  I6L38_RS21395 (I6L38_21395) ptsN 4619425..4619871 (+) 447 WP_005305951.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6L38_RS21400 (I6L38_21400) rapZ 4619914..4620780 (+) 867 WP_005305946.1 RNase adapter RapZ -
  I6L38_RS21405 (I6L38_21405) npr 4620801..4621073 (+) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  I6L38_RS21410 (I6L38_21410) - 4621089..4622993 (-) 1905 WP_201889597.1 transcription antiterminator -
  I6L38_RS21415 (I6L38_21415) - 4623098..4623838 (-) 741 WP_201889598.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53876.83 Da        Isoelectric Point: 4.3584

>NTDB_id=581127 I6L38_RS21385 WP_017784940.1 4617674..4619113(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1408]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLRENDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=581127 I6L38_RS21385 WP_017784940.1 4617674..4619113(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1408]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGTTGGAGCAAGAGGAAAACGACG
TTCAGGAGACCAGCCCGGTCGACCAGGTGGACGTCAGCCAGCTCGATTCCAGCGATGCCATGGCCCAGGACCAGATGCCG
GACGAACTGCCGGTGGATACCACCTGGGAAGAGGTCTACTCGGCCGGCACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCATCTATCAGGGTGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCTTGACCCCGTTCA
GCGACGTGGATGCCGCCATCGCCCTCGCCATCATAGATGCTATCGACGAATCCGGTTATCTGACGGTGTCGCTTGAGGAT
ATTCAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAGTACTCCCCTGACTTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTGAGAGAGAACGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCGCGGCCCGGCAACGGCGTCAT
CCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCTG
ACTCGGCCCCGCGCATCCGGGTCAACGAAACCTATGCCGCCATGGCCAGACAGGCCCGCACCAGTCAGGATACCCAATTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGCCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACCACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAACCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.866

100

0.486