Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MTR79_RS24630 Genome accession   NZ_CP094918
Coordinates   5437314..5439401 (+) Length   695 a.a.
NCBI ID   WP_086698990.1    Uniprot ID   A0ABN3X277
Organism   Streptomyces sp. BJ20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5432314..5444401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTR79_RS24610 - 5433176..5433913 (-) 738 WP_086698795.1 nucleotidyltransferase domain-containing protein -
  MTR79_RS24615 - 5434402..5435508 (-) 1107 WP_244791982.1 amidohydrolase family protein -
  MTR79_RS24620 - 5435593..5435925 (-) 333 WP_086698991.1 hypothetical protein -
  MTR79_RS24625 - 5436020..5436973 (-) 954 WP_244791983.1 heme o synthase -
  MTR79_RS24630 recP/tkt 5437314..5439401 (+) 2088 WP_086698990.1 transketolase Machinery gene
  MTR79_RS24635 tal 5439436..5440554 (+) 1119 WP_189463160.1 transaldolase -
  MTR79_RS24640 zwf 5440559..5442082 (+) 1524 WP_086698987.1 glucose-6-phosphate dehydrogenase -
  MTR79_RS24645 opcA 5442079..5443146 (+) 1068 WP_244791984.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  MTR79_RS24650 pgl 5443143..5443928 (+) 786 WP_122216816.1 6-phosphogluconolactonase -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 75177.97 Da        Isoelectric Point: 5.0134

>NTDB_id=581024 MTR79_RS24630 WP_086698990.1 5437314..5439401(+) (recP/tkt) [Streptomyces sp. BJ20]
MSTKPTTTDLEWTELDQRAVDTARVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADADWVGRDRFVLSAGHSS
LTLYTQLYLAGFGLELDDLKSFRTWGSKTPGHPEYGHTTGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAPAGESPF
DHHIYCIAGDGCLQEGISAEASSLAGHQKLGNLILLWDDNHISIEGDTETAVSEDTVKRYEAYGWHVQRVAPKPDGDLDP
NAIYDAIQEAKKVTDRPSFIAMRSIIAWPAPNAQNTEAAHGSALGDDEVAATKRVLGFDPEKTFEVADEVIAHTRRALER
GQAARSVWEKSFQQWRDNNPERAAEYDRIAAGELPKGWQDALPVFEPGKGVATRAASGKVLQALGAVIPELWGGSADLAG
SNNTTIDKTSSFLPADNPLPEANPYGRTIHFGIREHSMAAEMNGIALHGNTRIYAGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNVVRPADANETAIAWREILKRWTKEFGKGAPHGLALTRQGVPTYEPDE
DAARGGYVLFEAEGGEPEVVLIATGSEVHVAVEARERLQADGVPTRVVSMPSVEWFEEQDQGYRDSVLPPSVKARVAVEA
GIGLTWHKYVGDAGRIVSLEHFGASADGKVLFQEYGFTADNVAAVARESIAAARR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=581024 MTR79_RS24630 WP_086698990.1 5437314..5439401(+) (recP/tkt) [Streptomyces sp. BJ20]
GTGAGCACAAAGCCGACCACCACAGACCTCGAGTGGACCGAGCTGGACCAGCGGGCCGTCGACACCGCCCGCGTCCTGGC
CGCCGATGCCGTACAGAAGGTCGGCAACGGCCATCCGGGTACGGCGATGAGCCTGGCGCCTGCCGCCTACACCCTCTTCC
AGAAGGTGATGCGGCACGACCCGGCGGACGCCGACTGGGTCGGGCGAGACCGCTTCGTGCTGTCCGCCGGTCACTCGTCC
CTGACCCTCTACACCCAGCTCTACCTGGCCGGCTTCGGCCTGGAGCTGGACGACCTGAAGTCCTTCCGCACCTGGGGCTC
GAAGACCCCGGGCCACCCGGAGTACGGGCACACCACGGGCGTGGAGACCACGACCGGCCCGCTCGGCCAGGGTGTCGCCA
ACGCGGTGGGCATGGCGATGGCCGCCCGCTACGAGCGCGGGCTGTTCGACCCGGAGGCCCCCGCCGGGGAGTCGCCGTTC
GACCACCACATCTACTGCATCGCCGGTGACGGCTGCCTCCAGGAGGGCATCTCCGCCGAGGCGTCCTCGCTGGCCGGGCA
CCAGAAGCTCGGCAACCTGATCCTGCTGTGGGACGACAACCACATCTCGATCGAGGGCGACACGGAGACGGCCGTCTCCG
AGGACACGGTCAAGCGGTACGAGGCGTACGGCTGGCACGTGCAGCGCGTGGCCCCGAAGCCCGACGGCGACCTGGACCCG
AACGCGATCTACGACGCGATCCAGGAGGCGAAGAAGGTCACCGACCGGCCGTCCTTCATCGCGATGCGCTCGATCATCGC
CTGGCCCGCCCCGAACGCGCAGAACACCGAGGCCGCGCACGGCTCGGCGCTCGGCGACGACGAGGTCGCGGCCACCAAGC
GCGTCCTGGGCTTCGACCCGGAGAAGACCTTCGAGGTCGCCGACGAGGTCATCGCGCACACCCGCAGGGCGCTGGAGCGC
GGCCAGGCCGCCCGCTCCGTGTGGGAGAAGTCCTTCCAGCAGTGGCGGGACAACAACCCCGAGCGCGCCGCCGAGTACGA
CCGGATCGCCGCCGGTGAGCTGCCCAAGGGCTGGCAGGACGCGCTGCCGGTGTTCGAGCCGGGCAAGGGCGTCGCCACCC
GCGCCGCCTCCGGCAAGGTGCTGCAGGCGCTCGGCGCGGTGATCCCGGAGCTGTGGGGCGGCTCGGCCGACCTCGCCGGC
TCCAACAACACGACGATCGACAAGACGTCGTCGTTCCTCCCGGCGGACAACCCGCTGCCGGAGGCGAACCCGTACGGCCG
CACGATCCACTTCGGCATCCGCGAGCACTCCATGGCCGCGGAGATGAACGGCATCGCGCTGCACGGCAACACCCGCATCT
ACGCCGGCACCTTCCTGGTGTTCTCGGACTACATGCGCAACGCCGTGCGTCTGTCCGCGCTGATGCACCTGCCGGTGACG
TACGTGTGGACGCACGACTCCATCGGTCTCGGCGAGGACGGCCCGACCCACCAGCCGGTCGAGCACCTCGCGTCGCTGCG
CGCCATCCCGGGCCTGAACGTGGTCCGCCCGGCCGACGCGAACGAGACCGCGATCGCCTGGCGCGAGATCCTCAAGCGCT
GGACCAAGGAGTTCGGCAAGGGCGCCCCGCACGGTCTGGCGCTCACCCGCCAGGGCGTGCCGACGTACGAGCCCGACGAG
GACGCGGCCCGCGGCGGCTACGTGCTGTTCGAGGCCGAGGGCGGCGAGCCCGAGGTCGTCCTGATCGCCACCGGCTCCGA
GGTGCACGTCGCCGTCGAGGCGCGCGAGCGGCTCCAGGCCGACGGCGTGCCGACGCGCGTGGTGTCGATGCCGTCCGTCG
AGTGGTTCGAGGAGCAGGACCAGGGGTACCGGGACAGCGTCCTGCCGCCGTCCGTGAAGGCGCGCGTGGCCGTCGAGGCG
GGCATCGGTCTCACCTGGCACAAGTACGTGGGCGACGCCGGCCGCATCGTCTCGCTGGAGCACTTCGGCGCCTCCGCCGA
CGGCAAGGTGCTGTTCCAGGAGTACGGCTTCACCGCCGACAACGTGGCCGCCGTCGCGCGGGAATCGATCGCCGCCGCCC
GGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)

Transketolase, C-terminal domain (Transketolase_C)

(576-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.69

97.554

0.436