Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   STO1_RS08155 Genome accession   NZ_AP018338
Coordinates   1596995..1597708 (+) Length   237 a.a.
NCBI ID   WP_096422778.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591995..1602708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS08140 (STO1_015610) - 1592658..1592903 (-) 246 WP_000364980.1 YneF family protein -
  STO1_RS08145 (STO1_015620) treC 1593048..1594673 (-) 1626 WP_096422776.1 alpha,alpha-phosphotrehalase -
  STO1_RS08150 (STO1_015630) treP 1594737..1596704 (-) 1968 WP_000514302.1 PTS system trehalose-specific EIIBC component -
  STO1_RS08155 (STO1_015640) treR 1596995..1597708 (+) 714 WP_096422778.1 trehalose operon repressor Regulator

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27801.84 Da        Isoelectric Point: 6.7686

>NTDB_id=58102 STO1_RS08155 WP_096422778.1 1596995..1597708(+) (treR) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKKYQQLFKQIQENIQNETYAIGEFLPSEHDLMNQYQVSRDTVRRALSLLQEEGLIKKIKGQGSQVVKEETVNFPVSNLT
SYQELVQELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNVTRQIAEHSIY
SYIEDDLKLLIDYAQKEITIDHSNDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFHFVDFAKRHPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=58102 STO1_RS08155 WP_096422778.1 1596995..1597708(+) (treR) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAGAAATACCAACAATTATTTAAGCAAATACAAGAAAACATTCAAAATGAGACTTACGCTATCGGAGAGTTCCTTCC
TAGTGAGCACGACCTCATGAACCAATATCAAGTGAGTCGTGATACTGTCCGAAGGGCTCTTTCCTTACTCCAAGAGGAAG
GATTGATCAAAAAGATAAAAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACGGTCAATTTCCCTGTCTCCAACCTAACC
AGCTACCAAGAACTGGTCCAGGAACTTGGACTTCGCTCTAAGACTAATGTCGTCAGTCTGGACAAGATCATTATCGATAA
AAAGTCCTCACTGATAACCGGCTTTCCAGAGTTTAGGATGGTGTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGACCTAG
TATCGGTTCTGGATACGGACTATCTGGATATGGAACTAATCCCAAATGTCACTCGCCAAATTGCTGAGCATTCTATCTAT
TCTTATATAGAGGATGACCTCAAACTTCTTATTGATTATGCTCAAAAGGAAATCACTATCGATCATAGTAACGATAGGGA
CAAGATTCTCATGGACATAGGTAAAGACCCTTATGTCGTTTCAATCAAGTCAAAAGTCTATCTCCAAGACGGGCGCCAGT
TTCAGTTCACCGAAAGTCGCCATAAATTAGAAAAATTTCACTTTGTTGACTTTGCCAAAAGGCATCCGAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

57.872

99.156

0.574

Multiple sequence alignment