Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6L36_RS14900 Genome accession   NZ_CP077378
Coordinates   3151121..3152560 (+) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1406     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3146121..3157560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L36_RS14870 (I6L36_14870) mlaF 3146699..3147499 (-) 801 WP_039040471.1 phospholipid ABC transporter ATP-binding protein MlaF -
  I6L36_RS14875 (I6L36_14875) - 3147706..3148701 (+) 996 WP_029314845.1 KpsF/GutQ family sugar-phosphate isomerase -
  I6L36_RS14880 (I6L36_14880) kdsC 3148701..3149255 (+) 555 WP_042864828.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  I6L36_RS14885 (I6L36_14885) lptC 3149252..3149812 (+) 561 WP_109112475.1 LPS export ABC transporter periplasmic protein LptC -
  I6L36_RS14890 (I6L36_14890) lptA 3149799..3150317 (+) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  I6L36_RS14895 (I6L36_14895) lptB 3150330..3151055 (+) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  I6L36_RS14900 (I6L36_14900) rpoN/rpoN1 3151121..3152560 (+) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  I6L36_RS14905 (I6L36_14905) hpf 3152581..3152868 (+) 288 WP_005305957.1 ribosome hibernation promoting factor -
  I6L36_RS14910 (I6L36_14910) ptsN 3152871..3153317 (+) 447 WP_010675870.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6L36_RS14915 (I6L36_14915) rapZ 3153358..3154224 (+) 867 WP_010675869.1 RNase adapter RapZ -
  I6L36_RS14920 (I6L36_14920) npr 3154245..3154517 (+) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  I6L36_RS14925 (I6L36_14925) - 3154533..3156437 (-) 1905 WP_216986726.1 transcription antiterminator -
  I6L36_RS14930 (I6L36_14930) - 3156541..3157281 (-) 741 WP_109113025.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=581019 I6L36_RS14900 WP_039040474.1 3151121..3152560(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1406]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=581019 I6L36_RS14900 WP_039040474.1 3151121..3152560(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1406]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACGGCCCAGAGCGCAGGTCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAGGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCTGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATAGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGTAGCAAGTGGGTGGTTGAACTCAATCCGG
ATTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCCCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATTTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGCGCCCTGATCAA
GAAGCTGGTGACGGCGGAAAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482