Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   I6L24_RS05365 Genome accession   NZ_CP077369
Coordinates   1156301..1158523 (-) Length   740 a.a.
NCBI ID   WP_216986498.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1394     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1151301..1163523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L24_RS05340 (I6L24_05340) - 1151500..1151757 (-) 258 WP_004278574.1 YdcH family protein -
  I6L24_RS05345 (I6L24_05345) - 1151847..1152176 (-) 330 WP_004278573.1 chaperone modulator CbpM -
  I6L24_RS05350 (I6L24_05350) - 1152661..1153122 (-) 462 WP_005102907.1 DUF2147 domain-containing protein -
  I6L24_RS05355 (I6L24_05355) - 1153446..1154321 (-) 876 WP_216986496.1 Hsp33 family molecular chaperone HslO -
  I6L24_RS05360 (I6L24_05360) - 1154372..1156225 (-) 1854 WP_216986497.1 cation:proton antiporter -
  I6L24_RS05365 (I6L24_05365) priA 1156301..1158523 (-) 2223 WP_216986498.1 primosomal protein N' Machinery gene
  I6L24_RS05370 (I6L24_05370) gspF 1158674..1159879 (+) 1206 WP_216986499.1 type II secretion system inner membrane protein GspF -
  I6L24_RS05375 (I6L24_05375) gspG 1159955..1160389 (+) 435 WP_005250505.1 type II secretion system major pseudopilin GspG -
  I6L24_RS05380 (I6L24_05380) - 1160674..1161009 (+) 336 WP_216986500.1 hypothetical protein -
  I6L24_RS05385 (I6L24_05385) lnt 1161165..1162724 (-) 1560 WP_216986501.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84072.08 Da        Isoelectric Point: 8.5527

>NTDB_id=580990 I6L24_RS05365 WP_216986498.1 1156301..1158523(-) (priA) [Acinetobacter lwoffii strain FDAARGOS 1394]
MQNSHTDLSPIYRVRVAVPVHVFDCFDYTMSAEQFKQAQIGARVMVSFGRQNLVGVIIEKLSADTPLDPRFKLKAVTELL
DERAIIDSKVLSLLTWSAQYYQFPIGEVVHSALPTLLRQGKPYNLLARTWKLLDPDAEAKVRRSDKQQEAYRILKLHPVG
TTENVLNMAGIETATLKALEKKEICACVLEPQDFSPQPVQLAQMPLTANPEQKHAVEQVLKYSNQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQSAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVLLGSATPSIDSYALVEHGKMQVLELNQRAGTALMPKIHI
LDLKVAQKKHGISLQLIQDIKKRLEKKEQVLIFLNRRGYAPVLLCGSCGWQAQCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHQELVTLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVNENYRVFAQQTLKERQIARM
PPYRYAILIRCESKDQAQNTEFLQKHAALLRQYPDLALDIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRSWWQNM
LQDKPSSMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=580990 I6L24_RS05365 WP_216986498.1 1156301..1158523(-) (priA) [Acinetobacter lwoffii strain FDAARGOS 1394]
ATGCAAAATTCCCACACCGATTTAAGTCCAATTTATCGCGTACGCGTTGCTGTACCTGTGCATGTATTTGATTGTTTTGA
TTACACGATGAGTGCAGAACAATTTAAACAGGCGCAGATTGGCGCACGTGTAATGGTGTCATTTGGACGTCAGAATCTGG
TCGGGGTGATTATCGAAAAACTGTCCGCAGACACTCCTCTCGATCCGCGCTTTAAACTTAAGGCAGTGACCGAACTACTT
GATGAACGTGCCATTATAGATAGCAAAGTTTTAAGTTTGTTGACATGGTCAGCGCAGTATTATCAGTTCCCGATCGGTGA
AGTCGTCCACAGTGCCCTGCCGACCCTGCTGCGTCAGGGCAAGCCTTATAACCTGCTGGCCCGTACCTGGAAATTACTGG
ACCCTGATGCCGAGGCCAAAGTACGCCGTTCGGACAAGCAGCAGGAAGCCTACCGGATTTTAAAACTGCATCCGGTCGGG
ACTACTGAAAATGTGCTGAATATGGCCGGGATTGAAACCGCGACCTTAAAAGCACTGGAGAAAAAAGAGATTTGCGCCTG
TGTACTGGAGCCACAAGATTTCAGTCCACAGCCAGTGCAATTGGCACAGATGCCGCTGACCGCCAATCCTGAACAAAAAC
ATGCAGTCGAACAGGTATTAAAATATAGCAATCAATATCAAGCTTTTTTACTGGATGGTCTGACCGGTAGCGGTAAAACT
GAAGTGTATTTGCAGATCATGGAACAGGTACTAAAACAGGGCAAACAGGTGCTGGTGCTGGTGCCGGAAATCGGCCTGAC
GCCGCAAACCATCAGCCGTTTTCAGTCCCGTTTTCATTGCCATATTGCGTTGCTGCACTCCGGTTTGAATGATTCCAAAC
GGCTACAGGCCTGGCAGTCGGCAGAAACTGGCAAAGCCTCAATTGTGCTTGGTACACGTTCCGCCATTTATACGCCAATG
CCGAATCTGGGCCTGATCATTCTGGATGAAGAACATGACCTGTCCTTTAAACAGCAGGAAGGCTTCCGCTATCATGCCCG
TGATGTCGCCCTGTACCGCGGCCATTTACAGCAATGTCCAGTGCTGCTGGGGTCAGCGACGCCAAGCATTGACAGTTATG
CACTGGTTGAACATGGCAAGATGCAGGTGCTGGAGCTGAATCAACGTGCCGGCACGGCCTTGATGCCCAAAATCCATATT
CTGGATTTAAAAGTTGCGCAAAAAAAGCATGGAATTAGCCTGCAATTGATTCAGGACATCAAAAAGCGTCTGGAGAAAAA
AGAACAGGTACTGATTTTTTTAAACCGCCGTGGCTATGCCCCCGTCTTGCTTTGTGGCAGCTGTGGCTGGCAGGCGCAAT
GTCCGCACTGTGATGCCAACTTCACTGTACACCGCCAGCCTTATCAGCATCTGCATTGCCATCACTGCGGTACTATTCAC
CGCATGCCGGAACACTGCCCGCAATGTCAGCATCAGGAACTGGTTACACTGGGTATGGGCACCGGCAAAGTCGAAGAACA
TCTGAATGAACTCTTTCCGGATTTTGAGGTGATTCGGGTCGATCGCGATTCCACCAGTCGGGTCGGCAGCTGGCAAAAAA
TTTATGACAAGATTCAGAAAAGCGAACCTGCCATTTTGCTCGGCACCCAGATGCTGGCCAAGGGACACCATTTTCCTTAT
GTCACTCTGGTGGCGATTCTGGATATCGATTCCGGTCTGCTCAGTGTGGATTTCCGTGCTACTGAGCGGACTGCGCAACT
GATCGTGCAGGTGGCTGGCCGGGCAGGCCGCGGTGAACATAAGGGTGATGTCTATCTACAAACGCTCAGGCCTGATCATG
CCCTGCTGAATACCCTGGTCAATGAAAATTATCGCGTGTTTGCCCAGCAGACTTTAAAAGAACGGCAGATAGCCAGAATG
CCGCCCTACCGTTATGCCATCCTGATTCGTTGTGAATCCAAAGATCAAGCACAAAATACCGAATTCTTACAGAAACATGC
AGCTCTCCTCAGGCAATATCCTGATCTGGCGCTAGACATCTGGGGACCGATTCCTGCGCCAATGGAACGTAAGGCGGGAC
GCTATCAGTCACATATGGTGCTATTGTCAGCGGATCGTCCACGTCTGCATTACTATGTGCGCAGCTGGTGGCAAAATATG
CTGCAGGACAAACCTTCCAGCATGAAGCTCACGCTGGACATCGACCCTCAGGAACTGAGCTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(209-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.39

99.189

0.708