Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6L24_RS05075 Genome accession   NZ_CP077369
Coordinates   1087455..1087781 (+) Length   108 a.a.
NCBI ID   WP_026055760.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1394     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1082455..1092781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L24_RS05050 (I6L24_05050) hemC 1083138..1084061 (+) 924 WP_216986486.1 hydroxymethylbilane synthase -
  I6L24_RS05055 (I6L24_05055) - 1084061..1084840 (+) 780 WP_216986487.1 uroporphyrinogen-III synthase -
  I6L24_RS05060 (I6L24_05060) - 1084837..1085676 (+) 840 WP_005105429.1 hypothetical protein -
  I6L24_RS05065 (I6L24_05065) - 1085683..1086876 (+) 1194 WP_005250450.1 hypothetical protein -
  I6L24_RS05070 (I6L24_05070) - 1086885..1087313 (+) 429 WP_086044203.1 acyl-CoA thioesterase -
  I6L24_RS05075 (I6L24_05075) hns 1087455..1087781 (+) 327 WP_026055760.1 H-NS family nucleoid-associated regulatory protein Regulator
  I6L24_RS05080 (I6L24_05080) gspN 1087965..1088708 (+) 744 WP_005250453.1 type II secretion system protein N -
  I6L24_RS05085 (I6L24_05085) - 1088708..1089562 (+) 855 WP_086044202.1 type II secretion system protein N -
  I6L24_RS05090 (I6L24_05090) gspD 1089601..1091865 (+) 2265 WP_005102817.1 type II secretion system secretin GspD -
  I6L24_RS05095 (I6L24_05095) - 1091928..1092587 (+) 660 WP_004729299.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12318.07 Da        Isoelectric Point: 7.0196

>NTDB_id=580989 I6L24_RS05075 WP_026055760.1 1087455..1087781(+) (hns) [Acinetobacter lwoffii strain FDAARGOS 1394]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVAEKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELEKGAKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=580989 I6L24_RS05075 WP_026055760.1 1087455..1087781(+) (hns) [Acinetobacter lwoffii strain FDAARGOS 1394]
ATTATGCCAGATATTACGCATTTATCAGTAGAAGAGTTAAAACGTTTACAAGCAGAAGCAGAATCGCTGATTGCTTCAAA
AAAAGATCAAGAAATTGAAGACGCTTATCAGCAAATCTTGGCAGTTGCTGAGAAAGTGGGTATGACGGTTGAACAGTTAC
TTGAATTTGGTGCATCTAAGCGTAAGAAATCGTCACGTAAGTCGGTTGAACCGCGTTACCGTAGCAAAAGCAATCCGGAC
GATACCTGGACTGGCCGTGGTAAACAGCCGCGCTGGTTGGTGGCTGAATTGGAAAAAGGCGCAAAGCTGGACGATTTCCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787