Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MTR79_RS01795 Genome accession   NZ_CP094918
Coordinates   372749..374161 (-) Length   470 a.a.
NCBI ID   WP_048459561.1    Uniprot ID   A0ABT0VTW7
Organism   Streptomyces sp. BJ20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 367749..379161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTR79_RS01775 - 369007..369672 (+) 666 WP_175448744.1 response regulator transcription factor -
  MTR79_RS01780 - 369680..370327 (-) 648 WP_244788892.1 phosphatase PAP2 family protein -
  MTR79_RS01785 - 370502..371377 (+) 876 WP_244788894.1 hypothetical protein -
  MTR79_RS01790 disA 371555..372679 (-) 1125 WP_031020135.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  MTR79_RS01795 radA 372749..374161 (-) 1413 WP_048459561.1 DNA repair protein RadA Machinery gene
  MTR79_RS01800 - 374708..376483 (+) 1776 WP_189463242.1 hypothetical protein -
  MTR79_RS01805 - 376702..377577 (-) 876 WP_189366794.1 hypothetical protein -
  MTR79_RS01810 - 377673..378605 (+) 933 WP_244788896.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49800.85 Da        Isoelectric Point: 7.7526

>NTDB_id=580981 MTR79_RS01795 WP_048459561.1 372749..374161(-) (radA) [Streptomyces sp. BJ20]
MAARTKTSKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAAPAVRTTAPGRVTTSALPIGQVDGKQATARSTGVPE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMKVREVADIGDALRVLPRSRRREAPQEPEDRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=580981 MTR79_RS01795 WP_048459561.1 372749..374161(-) (radA) [Streptomyces sp. BJ20]
ATGGCTGCCCGTACCAAGACCTCCAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGATGGCAGACGGCCAAGTGGCT
CGGGCGGTGTCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGTGCGGCGCCCGCCGTGCGGACCACCGCGCCGG
GCCGGGTCACCACGTCCGCGCTGCCCATCGGGCAGGTCGACGGGAAGCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGGGTCGGCAAGTCCAC
GCTGCTGCTGGACGTCGCCGCCAAGTCCGCGAGCGACGAGCACCGCACGCTGTACGTCACCGGTGAGGAGTCGGCGAGCC
AGGTCCGCCTGCGCGCCGACCGCATCCACGCCATCGACGACCACCTCTATCTCGCCGCCGAGACGGATCTGTCCGCCGTG
CTCGGCCACTTGGACGCGGTGAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTGGCCTCCCCCGAGATCGACGG
CGCGCCGGGCGGCATGGCCCAGGTGCGCGAGGTGGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCACGC
TCCTCGTGGGACACGTCACCAAGGACGGCGCCATCGCGGGCCCCCGCCTCCTGGAGCACCTCGTGGACGTGGTGCTGCAC
TTCGAGGGCGACCGGCACGCCCGCCTGCGTCTGGTCCGCGGCGTCAAGAACCGCTACGGCACGACCGACGAGGTCGGCTG
CTTCGAACTGCACGACGAGGGCATCACGGGCCTCGCGGACCCGAGCGGACTTTTCCTGACCCGTCGTGACGAACCGGTCC
CCGGCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTGGACTCGCAG
ATCCCCTCCCCCCGCCGCACCACCTCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTGCTGGAACAGCGCGG
CCGGATCAGCGCCTTGGGCAAAAGGGACATCTACTCCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCGGCCGCGGACC
TGGCCGTCGCGCTCGCCCTGGCGTCGGCCGCGAGCGACACCCCGCTGCCGAAGAACCTCGTCGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTGAGACGCGTCACGGGCGTGCAGCGCAGGCTCGCCGAGGCGCACCGCCTCGGCTTCACGCACGCCCT
GGTGCCGGGCGATCCGGGCAAGGTCCCTGCGGGCATGAAGGTACGGGAAGTGGCGGACATAGGGGACGCGCTGCGGGTCC
TTCCCCGCTCCCGTCGGCGAGAGGCCCCACAGGAGCCGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

AAA domain (AAA_25)

(79-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

42.605

96.383

0.411
  radA Streptococcus pneumoniae D39

42.605

96.383

0.411
  radA Streptococcus pneumoniae R6

42.605

96.383

0.411
  radA Streptococcus pneumoniae Rx1

42.605

96.383

0.411
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.605

96.383

0.411
  radA Streptococcus mitis NCTC 12261

43.823

91.277

0.4
  radA Streptococcus mitis SK321

43.823

91.277

0.4