Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   I6L24_RS01535 Genome accession   NZ_CP077369
Coordinates   328138..328995 (-) Length   285 a.a.
NCBI ID   WP_216986319.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1394     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323138..333995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L24_RS01520 (I6L24_01520) miaB 324894..326351 (+) 1458 WP_216986317.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  I6L24_RS01525 (I6L24_01525) - 326389..327465 (+) 1077 WP_004732214.1 PhoH family protein -
  I6L24_RS01530 (I6L24_01530) ybeY 327488..327970 (+) 483 WP_216986318.1 rRNA maturation RNase YbeY -
  I6L24_RS01535 (I6L24_01535) tonB2 328138..328995 (-) 858 WP_216986319.1 energy transducer TonB Machinery gene
  I6L24_RS01540 (I6L24_01540) - 329259..329945 (+) 687 WP_005108629.1 hypothetical protein -
  I6L24_RS01545 (I6L24_01545) - 330105..330818 (+) 714 WP_005108628.1 DUF3108 domain-containing protein -
  I6L24_RS01550 (I6L24_01550) - 330907..331482 (+) 576 WP_005094083.1 xanthine phosphoribosyltransferase -
  I6L24_RS01555 (I6L24_01555) - 331793..332455 (-) 663 WP_034608358.1 hypothetical protein -
  I6L24_RS01560 (I6L24_01560) - 332539..333744 (-) 1206 WP_216986320.1 CsgG/HfaB family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32661.02 Da        Isoelectric Point: 5.7562

>NTDB_id=580970 I6L24_RS01535 WP_216986319.1 328138..328995(-) (tonB2) [Acinetobacter lwoffii strain FDAARGOS 1394]
MPLVRTWWKDPVFSSAVLAAGILHLIVLTLEFGMPQDRDTSTKEIAVSLRQTDEKIEHADFLAQTDQQGSGQFREAHRMS
SDMPSPLMEQHAGEELQESLDMLQQQQELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFREKVEFYGNRYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKASVRKAAPFGAFDSKMKEISELRVIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=580970 I6L24_RS01535 WP_216986319.1 328138..328995(-) (tonB2) [Acinetobacter lwoffii strain FDAARGOS 1394]
ATGCCTCTGGTCAGAACTTGGTGGAAAGATCCAGTGTTTAGCAGTGCGGTGCTTGCCGCAGGCATTCTGCATTTGATCGT
GCTGACCCTGGAATTTGGTATGCCGCAAGATCGGGATACCAGTACCAAAGAAATCGCAGTCAGTTTGCGCCAGACTGATG
AAAAAATTGAGCATGCTGATTTTCTCGCCCAAACGGACCAGCAGGGTTCCGGCCAGTTTAGAGAAGCTCATCGCATGTCG
AGTGATATGCCATCGCCGTTAATGGAACAACATGCAGGCGAAGAGCTGCAAGAAAGTCTGGATATGCTGCAACAGCAACA
GGAACTCAGTTTTGAAGAAAAAGTCCTGATGACCACCTTGAGCTGGCAAAAGCAGGCGGAAGAAAATCAGCGAAAAAAAA
TGCAGGAGCAATTACAGAGCCAGTTTCAGGCCAAAGCGGCCATGGTCGCCAGTCTGGAAGCGCAATATTTACAGCGTCAG
CAAAATTTCAGTCGTCAGCAAAAAATTAAGACTGTAGATGGTATTCAGTCCAAGCAGGATGTTTCTGCCGCCTATCTGGA
AAAGTTTCGCGAGAAAGTGGAGTTCTATGGGAACCGTTATTATCCGGAAGCAGCCAAACAACAGAATCTGGCAGGGGAAG
TGCGGCTGATGGTGATCCTCAATCAGAATGGCGGAATTCGTGCCATTCGACTGATTGACAGTTCAGGACATGCCATGTTG
GATGAAGCAGCCAAAGCTTCCGTGCGTAAGGCAGCGCCATTTGGTGCTTTCGATAGTAAAATGAAAGAAATTTCCGAACT
GCGGGTGATTCGTACCTGGCGTTTTGACCCGGCTGAAGCAGAGTTTGAGGTTCGTTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.477

97.895

0.719