Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   I6L24_RS00130 Genome accession   NZ_CP077369
Coordinates   20952..25403 (-) Length   1483 a.a.
NCBI ID   WP_085064468.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1394     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 15952..30403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L24_RS00100 (I6L24_00100) elsL 16926..17459 (-) 534 WP_085064464.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  I6L24_RS00105 (I6L24_00105) - 17585..17938 (-) 354 Protein_12 YbaN family protein -
  I6L24_RS00110 (I6L24_00110) - 18026..18901 (+) 876 WP_085064466.1 DUF1853 family protein -
  I6L24_RS00115 (I6L24_00115) - 19014..19166 (+) 153 WP_004280704.1 entericidin A/B family lipoprotein -
  I6L24_RS00120 (I6L24_00120) dapE 19288..20424 (+) 1137 WP_085064467.1 succinyl-diaminopimelate desuccinylase -
  I6L24_RS00125 (I6L24_00125) - 20490..20948 (-) 459 WP_044111490.1 hypothetical protein -
  I6L24_RS00130 (I6L24_00130) chpA 20952..25403 (-) 4452 WP_085064468.1 Hpt domain-containing protein Regulator
  I6L24_RS00135 (I6L24_00135) - 25571..27643 (-) 2073 WP_005106253.1 methyl-accepting chemotaxis protein -
  I6L24_RS00140 (I6L24_00140) - 27690..28226 (-) 537 WP_004280709.1 chemotaxis protein CheW -
  I6L24_RS00145 (I6L24_00145) - 28232..28600 (-) 369 WP_004280710.1 response regulator -
  I6L24_RS00150 (I6L24_00150) pilG 28626..29009 (-) 384 WP_004280711.1 twitching motility response regulator PilG Regulator
  I6L24_RS00155 (I6L24_00155) - 29296..29943 (+) 648 WP_005104054.1 hypothetical protein -

Sequence


Protein


Download         Length: 1483 a.a.        Molecular weight: 165845.84 Da        Isoelectric Point: 4.3422

>NTDB_id=580968 I6L24_RS00130 WP_085064468.1 20952..25403(-) (chpA) [Acinetobacter lwoffii strain FDAARGOS 1394]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELNALFPEWLSNPDHQENLKTIRRHFHTLKGSGRMVGAKSA
GEMAWAVEDTLNRVLSGSIQLTPTVQKFAQAVLNVYQYALYPKFKHVQQLDLDLRPMVLLGQQLQQQISPEPALEELLAL
ADHLTAEGQMTGLELTENEPSEVELTIAPVEVPVRSDIEETVAIFIEEAEEHLETIATFLRTEDEKSQDYNALIRAIHTL
RGSSSMAQIDQIFEASSKVEHLFKTLLQDEIVSTSKETALLIQYAEFVSDYLHLLRQGNTAKLDAVYATFERVWNNYGFA
VIETNSIQTQGLVSKLVELDIDLLLDAEFEFDKRAQVDYPEYIQALSQQAAELLAHTESRAAQGIHEFTADLKSAYDALL
EKPVLLNSDYAYELFAQAHQEFIHLFDTLAAGQRVILNDEIQKILSELSAFVQQDLEIFAEDTSNQNIELSSEATQVAET
VAPGSVDFAGLSQRIAADRQQQQSTETNRDFDEELLSIFLEEADELLAGIDEDLNTWSKKQDDTTSLNNLMRHLHTLKGG
ANMIAASHIGLIAHELESIYERVIRQQIAVTPALIQIIRLVQDNVSDRIQSIREDGIDYPAPEAIAILQNIQALVSGQAV
AAVESANTGVKVAEVEATSISEPQLEESATTEQPATDLAEAEELLEISKSSEAIEDTPVERSEEDELKSIVEESFLEESE
EILANAEKLLNQWFDQRSDRSLLLQLQRAAHSIKGGARMIDVEEVASIAYELETTFEQFAVYQFNSNAYDGLLQKTLVWL
RQAIFQRDYNGFDQLHSSLKKIAYVDVTAQLPERLAKTDNMVVSTDFGFVEGDGTEPPQMMGEWANSGTSDSNNEMIRIS
ADLVEKMIDLSGENSINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENSRYADFDPLEMDQYS
SLNQLSKSLAESASDLVDFKSTLADKVRETEGLLLQQSRIQAEIQESLMRTRLVPFDRMLPRLQRIVRQTSTTLNRPAEL
IVQNTEGELDRNILERLVTPFEHMLRNAIDHGLEDTADRIALNKPEVGSIVLNISRQGTDVIVSFSDDGKGIDAEKIREK
ALSLDLIKADQVIDQEEILQFIFHPGFSTAKAVTQISGRGVGLDVVQSEIKSLGGHVSVSSELGKGTVFTIRVPTTVAVS
DALMVKVGDQQYAISLAQIDRIVRIAPTTLESYFNSKDDYFKIDGANYKLRYLSEFVGNQPIPRLNNVGHSLPVLLIKGN
SGQTIALLVDQLVGSRAQIVVKPIGQQFANVGVVAGATILGDGQVCLILDGQNVARQIQATQRVKQLNDQRDGSRNSNAR
RLVMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDGFEVTNLVRHHDIHRDLPIIMI
TSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLIAEKQR

Nucleotide


Download         Length: 4452 bp        

>NTDB_id=580968 I6L24_RS00130 WP_085064468.1 20952..25403(-) (chpA) [Acinetobacter lwoffii strain FDAARGOS 1394]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACAACGCTTCCTGAAGATAGTTATCTTGACCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAGGAAATCGAAGAGATCTTCGTTGAGTTAAATGCTTTATTTCCAGAATGGTTGAGCAATCCAGATC
ATCAAGAAAATCTGAAAACCATTCGCCGCCATTTTCACACCCTGAAAGGTTCAGGCCGCATGGTCGGGGCAAAATCGGCA
GGGGAAATGGCCTGGGCGGTTGAAGATACCTTAAACCGGGTTTTGTCCGGTTCGATTCAGCTAACACCGACGGTACAGAA
ATTTGCCCAAGCGGTACTGAATGTCTATCAATATGCTTTATATCCAAAATTCAAACATGTACAGCAATTGGATCTCGATC
TGCGTCCAATGGTGCTGTTGGGACAACAATTACAACAACAAATTTCGCCTGAACCTGCATTGGAAGAATTACTGGCATTG
GCAGATCATTTGACCGCTGAAGGTCAGATGACAGGTCTTGAGCTTACAGAGAATGAGCCAAGTGAAGTTGAGCTAACAAT
AGCGCCAGTAGAAGTACCGGTTCGCAGTGATATCGAAGAAACTGTGGCGATCTTTATTGAAGAAGCAGAAGAGCATCTGG
AAACGATTGCCACCTTCCTTCGCACTGAAGATGAAAAATCACAAGATTATAATGCGCTGATTCGTGCGATTCATACTTTG
CGCGGCAGTTCATCCATGGCGCAGATTGACCAGATTTTTGAGGCCAGCTCTAAAGTGGAGCATCTGTTCAAAACCTTGCT
ACAAGATGAAATTGTCTCAACCTCAAAAGAAACCGCTTTACTGATTCAGTATGCTGAGTTTGTCAGTGACTATCTGCATT
TGCTACGTCAGGGCAATACTGCAAAACTGGATGCGGTATATGCCACCTTTGAGCGTGTCTGGAATAATTATGGCTTTGCA
GTTATTGAAACCAATAGCATTCAGACGCAAGGCTTGGTGTCCAAACTGGTTGAGTTGGATATTGATCTGTTATTGGATGC
CGAGTTTGAATTTGATAAACGTGCCCAAGTCGATTATCCGGAATATATTCAGGCACTCAGCCAGCAGGCTGCAGAATTGC
TGGCACATACAGAAAGCCGGGCAGCCCAAGGAATTCATGAATTCACTGCCGATCTGAAATCGGCTTATGATGCGCTACTT
GAAAAGCCAGTGCTGCTAAACAGTGATTATGCTTATGAGCTGTTCGCACAGGCACACCAGGAATTTATTCATTTATTTGA
TACCCTGGCCGCAGGACAGCGCGTCATTCTGAATGATGAGATTCAAAAAATACTCAGTGAACTGTCTGCATTTGTGCAGC
AGGATCTCGAGATATTTGCTGAAGATACTAGTAATCAGAATATTGAGCTAAGCTCAGAGGCCACACAAGTGGCTGAAACT
GTCGCGCCTGGCAGTGTCGATTTTGCTGGTTTGAGTCAACGCATCGCTGCAGATCGTCAGCAGCAGCAAAGTACTGAAAC
CAACCGTGATTTTGATGAAGAATTATTAAGTATCTTCCTGGAAGAAGCGGATGAATTGCTCGCAGGCATTGATGAAGATC
TGAATACCTGGAGCAAAAAACAGGATGATACGACCTCACTGAACAATCTGATGCGTCATTTGCATACCTTAAAAGGTGGT
GCAAACATGATCGCAGCATCGCATATCGGTTTGATTGCGCATGAACTAGAAAGTATTTATGAGCGGGTGATCCGTCAGCA
AATTGCCGTAACACCTGCTTTAATCCAGATTATTCGTCTGGTTCAGGATAACGTTTCCGATCGTATTCAATCCATTCGGG
AAGACGGTATTGATTATCCTGCACCAGAAGCGATTGCGATTCTGCAAAATATTCAGGCATTGGTTTCTGGACAAGCTGTT
GCTGCTGTGGAGAGCGCGAACACTGGAGTTAAAGTTGCAGAGGTCGAAGCGACATCAATTTCTGAGCCGCAACTTGAAGA
GTCAGCAACGACTGAACAGCCTGCAACTGATCTGGCTGAAGCTGAAGAATTACTGGAAATCTCTAAGTCTTCTGAGGCTA
TTGAAGACACACCAGTAGAACGCTCTGAAGAAGACGAACTGAAATCCATTGTTGAAGAATCTTTCCTTGAAGAATCCGAA
GAGATTCTGGCGAATGCCGAGAAGCTCCTCAATCAATGGTTTGATCAGCGTAGTGACCGTAGTTTATTGCTGCAATTACA
GCGTGCTGCCCACAGTATCAAGGGTGGTGCACGTATGATTGATGTTGAAGAAGTGGCCAGTATCGCCTATGAGCTGGAAA
CAACTTTCGAACAGTTTGCGGTCTATCAATTTAACTCGAATGCCTATGATGGCTTATTGCAGAAAACGCTGGTCTGGTTA
AGACAGGCGATTTTCCAGCGTGACTATAATGGTTTTGATCAGCTGCACAGCAGTCTGAAAAAGATTGCTTATGTGGACGT
TACTGCGCAATTGCCTGAGCGTCTGGCGAAGACAGATAATATGGTGGTCAGCACCGACTTTGGCTTCGTTGAAGGTGATG
GTACTGAACCGCCACAGATGATGGGTGAGTGGGCGAATAGCGGCACCAGCGATAGCAATAACGAGATGATCCGTATTTCT
GCTGATCTGGTCGAGAAGATGATTGACCTGTCCGGTGAGAACTCGATTAACCGTTCGCGTATCGAGATGGACCTGGGTCA
GCTAGGCAATACCCTGAACGAGATGGAATTGGCGATCAAACGTCTTGCTGATCAGTTACGTCGAATGGAAGGCGAGCTGG
AATCACAGATTATTGCCAAACATGGTTCAGAGAACTCGCGCTATGCCGACTTTGACCCGCTGGAAATGGACCAATATTCG
TCGCTCAACCAGCTGTCCAAGTCACTTGCAGAATCAGCATCAGATTTGGTCGACTTCAAGAGTACACTGGCCGACAAGGT
TCGCGAAACTGAAGGTCTGTTATTGCAACAATCCCGTATTCAGGCCGAGATTCAGGAAAGCCTGATGCGTACCCGTCTGG
TTCCATTTGATCGGATGTTGCCGCGTTTACAGCGTATCGTGCGTCAAACCTCGACCACCTTGAACCGTCCTGCAGAACTG
ATCGTACAGAATACCGAAGGTGAACTGGATCGTAACATTCTCGAGCGTCTGGTCACCCCATTTGAGCATATGCTGCGTAA
CGCGATTGACCATGGTCTGGAAGATACTGCAGATCGTATCGCACTGAACAAGCCGGAAGTCGGTTCTATTGTCTTGAACA
TCAGCCGTCAGGGAACCGATGTAATCGTGTCCTTTAGTGATGATGGTAAGGGGATCGATGCGGAGAAGATTCGTGAAAAA
GCGCTGAGTCTGGATCTAATCAAAGCGGATCAAGTCATTGATCAGGAAGAAATCCTGCAATTTATCTTCCATCCTGGTTT
CAGTACCGCGAAAGCAGTGACCCAGATTTCTGGTCGTGGTGTCGGTCTGGATGTGGTACAAAGCGAGATCAAATCACTGG
GCGGCCATGTGTCAGTGAGCTCGGAACTGGGCAAGGGTACGGTCTTTACGATTCGCGTACCGACGACCGTAGCGGTCAGC
GATGCCTTGATGGTGAAAGTGGGCGATCAGCAATATGCGATTTCTCTGGCGCAGATTGACCGAATTGTGCGTATTGCACC
GACCACATTGGAAAGCTATTTCAACAGTAAAGATGACTATTTCAAGATCGATGGCGCAAACTATAAGCTGCGTTATCTGT
CTGAGTTTGTTGGCAACCAGCCGATTCCACGTCTGAATAATGTTGGTCATTCATTGCCGGTGCTGTTGATTAAAGGTAAT
AGTGGTCAAACCATTGCCTTGCTGGTCGATCAGTTGGTCGGTTCACGAGCGCAGATTGTAGTAAAACCGATTGGACAGCA
GTTTGCCAACGTCGGGGTAGTGGCCGGTGCCACGATTCTGGGTGATGGTCAGGTCTGTCTGATTCTCGATGGACAGAATG
TTGCCCGCCAGATTCAGGCGACACAGCGTGTCAAACAGCTGAATGATCAGCGTGATGGTTCGCGTAATTCAAATGCACGT
CGTCTGGTGATGATTGTCGATGACTCGGTGACTGTACGTAAAGTGACGTCGCGTCTGCTTGAACGTCAAGGCTATGATAT
TGTCACTGCCAAAGATGGCGTAGATGCGATCGAGCAGCTTGAAAACGTCAGACCGGATCTGATGTTGCTGGATATCGAAA
TGCCGCGCATGGACGGTTTCGAAGTGACCAATCTGGTTCGTCACCATGATATTCACCGTGACTTGCCGATTATCATGATT
ACCTCACGTACCGGTGAGAAGCATCGTGAACGTGCATTCAGCTTGGGCGTAACGCATTATATGGGTAAACCGTTCCAGGA
AGCGGAACTGTTGGCCAATATCCAGCAACTGATTGCTGAAAAACAGAGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

61.254

100

0.626