Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6L77_RS18380 Genome accession   NZ_CP077366
Coordinates   3972828..3974210 (-) Length   460 a.a.
NCBI ID   WP_062759464.1    Uniprot ID   -
Organism   Pantoea agglomerans strain FDAARGOS 1447     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3967828..3979210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L77_RS18355 (I6L77_18355) - 3968603..3968767 (+) 165 WP_109652447.1 YhfG family protein -
  I6L77_RS18360 (I6L77_18360) - 3968780..3969382 (+) 603 WP_062759465.1 putative adenosine monophosphate-protein transferase Fic -
  I6L77_RS18365 (I6L77_18365) - 3969363..3970259 (-) 897 WP_010253616.1 LysR family transcriptional regulator -
  I6L77_RS18370 (I6L77_18370) - 3970464..3971465 (+) 1002 WP_033756486.1 zinc-binding alcohol dehydrogenase family protein -
  I6L77_RS18375 (I6L77_18375) nadR 3971511..3972752 (-) 1242 WP_010253612.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  I6L77_RS18380 (I6L77_18380) radA 3972828..3974210 (-) 1383 WP_062759464.1 DNA repair protein RadA Machinery gene
  I6L77_RS18385 (I6L77_18385) serB 3974224..3975201 (-) 978 WP_061901779.1 phosphoserine phosphatase -
  I6L77_RS18390 (I6L77_18390) - 3975309..3975959 (+) 651 WP_010253606.1 YtjB family periplasmic protein -
  I6L77_RS18395 (I6L77_18395) yjjG 3976626..3977306 (-) 681 WP_010671712.1 pyrimidine 5'-nucleotidase -
  I6L77_RS18400 (I6L77_18400) rimI 3977325..3977765 (-) 441 WP_010671713.1 ribosomal protein S18-alanine N-acetyltransferase -
  I6L77_RS18405 (I6L77_18405) - 3977737..3978147 (-) 411 WP_022625367.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49339.99 Da        Isoelectric Point: 7.4220

>NTDB_id=580967 I6L77_RS18380 WP_062759464.1 3972828..3974210(-) (radA) [Pantoea agglomerans strain FDAARGOS 1447]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERIAEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAIMDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=580967 I6L77_RS18380 WP_062759464.1 3972828..3974210(-) (radA) [Pantoea agglomerans strain FDAARGOS 1447]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGTGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATTGCCGCCTCGCCCGCGGCTGCGCGTAACGAGCGCCTGAGTGGCT
ATGCTGGCAGCGCCGGCACCAGCCGGGTGCAGAAGCTCTCTGAAATCAGCCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTCAAAGAGTTTGACCGGGTGCTGGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTGATTGGCGGCAGCCCCGGCGCAGG
CAAATCCACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCAGAGGGGATGAAAACCCTGTATGTCACCGGTGAAGAGTCAC
TGCAGCAGGTGGCGATGCGCGCCCATCGTCTGGGATTACCCACCGAAAATGTGAATATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAACAGGAGCAGCCGCAACTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGAGAT
CCAGTCCTCGCCCGGCAGCGTCGCCCAGGTGCGTGAAACCGCCGCTTACCTGACGCGCTTCGCCAAGACGCGCGGCGTGG
CGATCATCATGGTTGGTCACGTTACCAAAGATGGCTCCCTGGCCGGACCGAAAGTGCTGGAACACTGTATCGACTGTTCA
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGCGCGGTCAATGAACT
GGGTGTGTTTGCCATGACCGAGCAGGGCATGCGTGAAGTCAGCAACCCGTCAGCTATTTTCCTGTCGCGCGGCGAAGAGA
TCACCTCGGGCAGTTCGGTGATGGTGCTGTGGGAGGGAACGCGACCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGGCAATCCACGCCGCGTGGCAGTGGGTCTGGAGCAGAACCGCCTGGCGATTCTGCTGGCGGTGCTGCACCG
GCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTCAACGTGGTCGGCGGCGTCAAAGTCACTGAAACCAGTGCTG
ACCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGTTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGACTGGCGGGCGAAATCCGTCCGGTGCCCAGCGGTCAGGAGCGCATCGCTGAAGCGGCGAAGCATGGCTTCAAACGCGC
CATTGTGCCGGCAGGGAATGCACCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAGAAGCTGGCCGATGCGC
TGGCGATTATGGACGATCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424