Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   I6L30_RS13340 Genome accession   NZ_CP077365
Coordinates   2808115..2808999 (+) Length   294 a.a.
NCBI ID   WP_216984501.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2803115..2813999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS13315 (I6L30_13315) - 2803511..2804758 (-) 1248 WP_004705421.1 YihY family inner membrane protein -
  I6L30_RS13320 (I6L30_13320) wrbA 2805046..2805639 (+) 594 WP_216985836.1 NAD(P)H:quinone oxidoreductase -
  I6L30_RS13325 (I6L30_13325) - 2805693..2806268 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  I6L30_RS13330 (I6L30_13330) - 2806340..2807053 (-) 714 WP_151749370.1 DUF3108 domain-containing protein -
  I6L30_RS13335 (I6L30_13335) - 2807211..2807882 (-) 672 WP_004705429.1 hypothetical protein -
  I6L30_RS13340 (I6L30_13340) tonB2 2808115..2808999 (+) 885 WP_216984501.1 energy transducer TonB Machinery gene
  I6L30_RS13345 (I6L30_13345) ybeY 2809087..2809566 (-) 480 WP_068935665.1 rRNA maturation RNase YbeY -
  I6L30_RS13350 (I6L30_13350) - 2809842..2810930 (-) 1089 WP_004705435.1 PhoH family protein -
  I6L30_RS13355 (I6L30_13355) miaB 2810968..2812419 (-) 1452 WP_068935662.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33566.37 Da        Isoelectric Point: 9.1336

>NTDB_id=580941 I6L30_RS13340 WP_216984501.1 2808115..2808999(+) (tonB2) [Acinetobacter seifertii strain FDAARGOS 1400]
MLKKRSLSIEPFLYWWQDRVFIVAIILAILLHTLVLLIHFAMPAPSEQSTKEIAISIRPAEDAVKHADFLAQANQQGSGT
FREAHRMSSNSPTPMTTDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLESQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSVLDEAAKASVRRGAPFGRFDSNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=580941 I6L30_RS13340 WP_216984501.1 2808115..2808999(+) (tonB2) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGTTGAAAAAAAGAAGTCTTTCTATAGAGCCTTTTCTTTATTGGTGGCAAGACCGAGTCTTTATCGTTGCAATAATACT
CGCAATCTTGTTGCATACTCTTGTGCTGCTTATTCATTTTGCTATGCCTGCGCCGTCAGAGCAATCCACAAAAGAAATCG
CTATATCTATTCGTCCTGCTGAGGATGCTGTTAAGCATGCAGATTTTTTAGCGCAAGCAAACCAACAAGGTTCAGGAACT
TTTCGAGAGGCTCATCGGATGTCTAGTAATTCTCCGACGCCTATGACTACTGATGCTTCAACGGGAGAAGCCCAGTTAGA
AACTTTAGAAAAAGTACAGCAACAAAGAGAACTTAAGTTTGAAGAAAAAGTACTCATGACTGTGTTGAGTTGGCAGAAAC
AAGCTGAGGAGAGTCAAAGAAAGAAAGCACTTGAGCAATTAGAAAGCCAGTTTCAAGCTAAAGCTGCAATGGTCGCGAGC
CTAGAAGCTCAATATTTACAACGTCAGCAAGATTTCAGTCGTCAACAAAAAATAAAAACAGTCGATGGTATTCAAGCCAA
GAAAGATGCTTCAGCAGCTTATTTAGATAAGTTCCGTGAAAAGGTGGAGCTTTACGGTAACCGTTATTATCCAGAAGAAG
CTAAACAACAACAATTAAAAGGTGAAGTTCGCCTTATGGTGATTTTGAATGCTCAAGGGGGCATTCGTGCAATTCGTTTA
CTTGAAAGTTCAGGACATTCAGTTTTAGATGAAGCTGCAAAAGCTTCTGTACGCCGTGGTGCGCCATTTGGTCGTTTTGA
TAGCAATATGAAAGATATTTCTGAGCTACGTATTATTCGTACTTGGCGTTTTGATCCAGCTGAAGCTGAATTTGAGGTAC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.898

100

0.949