Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I6L30_RS09540 Genome accession   NZ_CP077365
Coordinates   2027200..2028768 (+) Length   522 a.a.
NCBI ID   WP_216984267.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2022200..2033768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS09520 (I6L30_09520) - 2022692..2023993 (+) 1302 WP_025465069.1 homoserine dehydrogenase -
  I6L30_RS09525 (I6L30_09525) thrC 2024048..2025187 (+) 1140 WP_019457006.1 threonine synthase -
  I6L30_RS09530 (I6L30_09530) pbpG 2025296..2026342 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  I6L30_RS09535 (I6L30_09535) - 2026554..2027189 (+) 636 WP_019457005.1 response regulator -
  I6L30_RS09540 (I6L30_09540) pilS 2027200..2028768 (+) 1569 WP_216984267.1 sensor histidine kinase Regulator
  I6L30_RS09545 (I6L30_09545) pilR 2028793..2030214 (+) 1422 WP_100192216.1 sigma-54-dependent transcriptional regulator Regulator
  I6L30_RS09550 (I6L30_09550) - 2030218..2031402 (-) 1185 WP_004699262.1 S41 family peptidase -
  I6L30_RS09555 (I6L30_09555) gpmI 2031418..2032965 (-) 1548 WP_174735270.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59042.26 Da        Isoelectric Point: 6.1447

>NTDB_id=580926 I6L30_RS09540 WP_216984267.1 2027200..2028768(+) (pilS) [Acinetobacter seifertii strain FDAARGOS 1400]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLTIILVSTNAQADNSLQQPSLYFYTLLGYSIVSLVQLLGFKFIAAQATRQ
LALFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLIITLLAIIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSVELYQLQNINRYILEQIEEGYLVLDEDYDIVLSNPAACSLLGIPPQFANE
KYPLAKWHTDLYEILKFGDLQEGDRFIFESRLSTYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQDTLRHMIGKQAKRIDSIVQDTLGLARSERTHPIQIDLNHFITSLFEEDLSDVK
QSIRLEISDNYLKFLFDEKQLRQVMINLVRNALRHNAPDSPNVTINIHSQANKIYIDVIDYGEGVLKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=580926 I6L30_RS09540 WP_216984267.1 2027200..2028768(+) (pilS) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGACTATTATTTTGGTTTCAACCAATGCTCAAGCCGACAATAGTTTGCAGCAACCATCTTTATATTTTT
ATACGCTACTAGGCTACTCAATTGTCAGTCTTGTTCAATTGTTAGGCTTTAAATTTATCGCAGCTCAGGCAACACGCCAG
CTTGCTTTATTTTTTATTGTCGATGTTATTTGTTTGAGTTTACTAACTTTTTCCGTTGGTGAACCAAATTTACAGCTTAG
TCTACTTTATGTAATTGCAATCTTTACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTAATCATTACCTTGCTTGCGA
TCATTGCAGTTATTTACCAACGCTTCGTGGGGAGTTTGTTCGACTACAACAATCTAAACACGATTGGGAATAGTGCCTTA
CTCGCTTTCTTATTTTTTGTAGTCCATGGGATTGGTCAAATTGCAGTTCAGCGCTTTAAACTACTCGAAGCTTTGACCTT
TCACCAGTCAGTTGAACTTTATCAACTTCAAAATATTAACCGTTATATTTTAGAACAAATTGAAGAAGGCTATTTAGTCT
TAGATGAAGACTACGACATTGTGCTCAGCAATCCAGCTGCTTGCTCACTGCTGGGTATTCCACCCCAATTTGCCAACGAA
AAATATCCTTTAGCCAAGTGGCATACCGACTTATATGAGATTCTTAAGTTTGGTGACTTACAAGAAGGTGACCGATTTAT
TTTTGAGTCTCGCCTATCGACTTATTCCATTAATATTAAAGTGCAGCACCTTTTGGTCCCACAACAAGCACTGACACTGC
TCATTTTACAAGATGCCCAGCAAATTAATCAGCAAGCACAACAGCTCAAACTTGCTGCTTTAGGACAACTTTCAGCAAGT
ATTGCACATGAAATCCGCAACCCTTTGGCTGCAATTGTACAAGCAAATGAGCTACTTAAAGATAGCGACCCAGAACAACA
AGATACTTTGCGACATATGATTGGTAAACAAGCCAAACGTATTGACAGTATTGTTCAAGATACTTTGGGGCTTGCACGTA
GTGAAAGAACTCATCCTATTCAAATTGACTTAAATCATTTTATAACAAGTTTATTCGAAGAAGATTTATCAGACGTTAAG
CAATCTATCCGACTCGAAATATCTGATAATTATCTAAAATTTTTATTTGATGAAAAACAATTACGACAAGTTATGATTAA
TTTGGTGCGAAATGCTTTACGGCATAATGCACCTGATTCACCTAATGTCACGATCAATATTCATTCACAAGCAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTATTAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

91.954

100

0.92