Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6L30_RS09375 Genome accession   NZ_CP077365
Coordinates   1995234..1995560 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1995872..1996804 1995234..1995560 flank 312


Gene organization within MGE regions


Location: 1995234..1996804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS09375 (I6L30_09375) hns 1995234..1995560 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  I6L30_RS09380 (I6L30_09380) - 1995754..1995816 (-) 63 Protein_1854 acyl-CoA thioesterase -
  I6L30_RS09385 (I6L30_09385) - 1995872..1996804 (+) 933 WP_002048759.1 IS5 family transposase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=580924 I6L30_RS09375 WP_002053185.1 1995234..1995560(-) (hns) [Acinetobacter seifertii strain FDAARGOS 1400]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=580924 I6L30_RS09375 WP_002053185.1 1995234..1995560(-) (hns) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACTACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991