Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   I6L30_RS08880 Genome accession   NZ_CP077365
Coordinates   1883424..1885652 (+) Length   742 a.a.
NCBI ID   WP_216985747.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1878424..1890652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS08855 (I6L30_08855) - 1879960..1880298 (-) 339 WP_209045787.1 tRNA-binding protein -
  I6L30_RS08860 (I6L30_08860) - 1880531..1880791 (+) 261 WP_019456904.1 DUF2798 domain-containing protein -
  I6L30_RS08865 (I6L30_08865) - 1880851..1881195 (-) 345 WP_216985746.1 hypothetical protein -
  I6L30_RS08870 (I6L30_08870) gspG 1881462..1882046 (-) 585 WP_216985818.1 type II secretion system major pseudopilin GspG -
  I6L30_RS08875 (I6L30_08875) gspF 1882070..1883275 (-) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  I6L30_RS08880 (I6L30_08880) priA 1883424..1885652 (+) 2229 WP_216985747.1 primosomal protein N' Machinery gene
  I6L30_RS08885 (I6L30_08885) - 1885728..1887569 (+) 1842 WP_216985748.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  I6L30_RS08890 (I6L30_08890) - 1887735..1888610 (+) 876 WP_004699009.1 Hsp33 family molecular chaperone HslO -
  I6L30_RS08895 (I6L30_08895) - 1888747..1889358 (+) 612 WP_100192270.1 LysE family translocator -
  I6L30_RS08900 (I6L30_08900) - 1889509..1890471 (+) 963 WP_216985749.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83957.81 Da        Isoelectric Point: 8.5625

>NTDB_id=580921 I6L30_RS08880 WP_216985747.1 1883424..1885652(+) (priA) [Acinetobacter seifertii strain FDAARGOS 1400]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGTFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLIDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYHLVETGKLTSLQLNQRAGHALLPKMH
LIDLKVVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=580921 I6L30_RS08880 WP_216985747.1 1883424..1885652(+) (priA) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGACCATAACGCCAAAACCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAGGTAGGTTCACGCGTCGCGATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCTGCCCAGTATTACCAATTTCCGATTGGTGA
AGTGATGCAAACGGCCCTACCCGCGTTATTGCGTCAGGGTAAACCAATGGATGTATTGTTTCATCTATGGAAAATCATTC
CTTGTGACAATGTTGAAGCCTTGTTAAAGCGTTCCATTAAGCAACAAGATGCATATCAAATTTTAAAATTACATCCTGCC
GGAACTACAGAAAATATTCTTAATTTAAGTGGTGTAGAAACTGCGACACTTAAAGCGTTACAAAAGAAAGGACTGATAGA
CTGTACACTTGAGCCTCATGATTTTAGCCCAGCACCTGTGCAATTGGCTCAAATGCCACTTACGCTAAATGATGATCAAA
AGAAGGCAACTCAGCACGTCATTAATGCACAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAGGTGTTAAAACAAGGTAAGCAAGTCCTAGTATTGGTTCCTGAAATTGGCTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGCGATATTGCTTTATTGCATTCAGGCTTAAATGACTCGA
AACGCCTACAAGCATGGCAACAGGCACAAACTGGTAAAGCATCTATTATTTTAGGAACTCGCTCAGCCATTTATACACCG
CTGCCACGTCTGGGCCTCATTATTTTAGATGAAGAACATGACCTGTCTTATAAGCAACAAGAAGGTTTCCGTTATCATGC
TCGTGATGTCGCACTGTACCGAGGCCACTTACAAAGCTGCCCTGTTATTTTAGGTTCGGCCACTCCAAGCATCGACAGCT
ATCACTTAGTAGAAACTGGTAAGTTAACTTCACTGCAACTGAACCAGCGTGCAGGCCACGCGCTTTTACCTAAAATGCAT
TTGATAGATCTTAAAGTTGTCAAAAAGCAGCATGGTATTAGCCAGCCTTTAATCGAGCAAATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAATCGTCGTGGTTATGCACCTGTATTGGTTTGTGAAAGCTGTGGATGGCAAGCAA
ATTGTCCCCATTGCGATGCACATTTTACGTTGCATACTCAGCCTTATTCTTATTTGCATTGTCACCACTGTGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAGAAGAGTTTAAAAACTTTAGGCGCAGGAACAGCCAAAGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGTGTTGACCGTGACAGCACAAGTCGTGTCGGTAGTTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCAACAATTTTGCTTGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCG
CATGTGACTTTGGTTGCTATTTTAGATATTGATGCAGGTTTACTAAGTGTCGATATTCGAGCGCCAGAACGTACGGCGCA
GTTGATTGTACAAGTGGCTGGTCGCGCAGGTCGTGGAGAACACAAAGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAGGATTATCGAGCGGTCGCGAAACAAACATTAGCTGAACGGAAAGTTGCATTA
CTACCGCCTTATCGTTATGCGGTCTTAATTCGTGCTGAGTCAAAAGATCGTGACTATACCTTGCATTTTTTAAATGAAGC
TGCTGAACAGCTTCGCCAAATTGCAGGTGATATTGTTGATATCTGGGGACCCATTCCAGCACCAATGGAACGTAAAGCTG
GACGTTACCGCGCCCATATGGTGATTTTATCTGCCGACCGTGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTCAGGCTCTCTATTGATGTTGATCCACAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.305

100

0.973