Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   I6L23_RS09205 Genome accession   NZ_CP077336
Coordinates   1958949..1959806 (+) Length   285 a.a.
NCBI ID   WP_004645097.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1393     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1953949..1964806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L23_RS09180 (I6L23_09180) - 1954183..1955388 (+) 1206 WP_004645091.1 CsgG/HfaB family protein -
  I6L23_RS09185 (I6L23_09185) - 1955473..1956147 (+) 675 WP_004645092.1 hypothetical protein -
  I6L23_RS09190 (I6L23_09190) - 1956460..1957035 (-) 576 WP_004645093.1 xanthine phosphoribosyltransferase -
  I6L23_RS09195 (I6L23_09195) - 1957124..1957837 (-) 714 WP_004645094.1 DUF3108 domain-containing protein -
  I6L23_RS09200 (I6L23_09200) - 1957997..1958683 (-) 687 WP_004645096.1 hypothetical protein -
  I6L23_RS09205 (I6L23_09205) tonB2 1958949..1959806 (+) 858 WP_004645097.1 energy transducer TonB Machinery gene
  I6L23_RS09210 (I6L23_09210) ybeY 1959975..1960457 (-) 483 WP_004645098.1 rRNA maturation RNase YbeY -
  I6L23_RS09215 (I6L23_09215) - 1960477..1961553 (-) 1077 WP_004645099.1 PhoH family protein -
  I6L23_RS09220 (I6L23_09220) miaB 1961592..1963049 (-) 1458 WP_004645100.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32696.05 Da        Isoelectric Point: 6.1614

>NTDB_id=580872 I6L23_RS09205 WP_004645097.1 1958949..1959806(+) (tonB2) [Acinetobacter lwoffii strain FDAARGOS 1393]
MPLVRTWWKDPVFSSAMLAAGILHLIVLTLEFGMPQDRDTSTKEIAVSLRQTDEDIEHADFLAQTNQQGSGQFREAHRMS
SDMPSPLMEQQAGEEQKESPDMLQQQRELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKSSVRKAAPFGAFDSKMKEISELRVIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=580872 I6L23_RS09205 WP_004645097.1 1958949..1959806(+) (tonB2) [Acinetobacter lwoffii strain FDAARGOS 1393]
ATGCCTCTGGTCAGAACTTGGTGGAAAGATCCAGTGTTTAGCAGTGCGATGCTTGCCGCAGGCATTCTGCATTTGATCGT
GCTGACCCTGGAATTTGGTATGCCGCAAGATCGGGATACCAGCACCAAAGAAATCGCCGTCAGTTTGCGACAGACGGATG
AAGATATTGAACATGCTGATTTTCTGGCTCAAACCAACCAGCAGGGTTCCGGTCAGTTTCGAGAAGCGCATCGCATGTCC
AGTGATATGCCATCGCCGTTAATGGAGCAGCAGGCGGGGGAAGAGCAAAAAGAAAGCCCGGATATGCTGCAACAGCAACG
GGAGCTGAGTTTCGAAGAAAAAGTGCTGATGACTACCTTGAGCTGGCAAAAGCAGGCAGAAGAAAATCAGCGTAAAAAAA
TGCAGGAACAGCTGCAAAGCCAGTTTCAGGCCAAAGCTGCGATGGTGGCGAGTCTGGAAGCACAATATTTACAGCGCCAG
CAAAACTTCAGTCGTCAGCAAAAAATTAAAACAGTCGATGGCATCCAGGCCAAGCAGGATGTCTCGGCTGCCTATTTGGA
AAAGTTCCGTCAGAAAGTGGAATTTTATGGTAACCGCTATTATCCGGAAGCCGCCAAACAGCAGAATCTGGCAGGGGAAG
TGCGTCTGATGGTGATCCTGAACCAGAATGGCGGAATTCGAGCGATTCGATTAATTGACAGTTCAGGACATGCCATGCTG
GATGAGGCCGCGAAATCTTCCGTGCGTAAGGCGGCGCCATTTGGTGCTTTCGATAGCAAAATGAAGGAAATTTCCGAACT
ACGAGTTATTCGTACCTGGCGTTTTGATCCGGCCGAAGCTGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.118

97.895

0.716