Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   I6L23_RS04545 Genome accession   NZ_CP077336
Coordinates   947501..948301 (-) Length   266 a.a.
NCBI ID   WP_004647462.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1393     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 942501..953301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L23_RS04525 (I6L23_04525) - 943546..944244 (-) 699 WP_004647466.1 YfgM family protein -
  I6L23_RS04530 (I6L23_04530) hisS 944275..945570 (-) 1296 WP_004647465.1 histidine--tRNA ligase -
  I6L23_RS04535 (I6L23_04535) ispG 945574..946695 (-) 1122 WP_004647464.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  I6L23_RS04540 (I6L23_04540) - 946719..947510 (-) 792 WP_004647463.1 helix-turn-helix domain-containing protein -
  I6L23_RS04545 (I6L23_04545) pilF 947501..948301 (-) 801 WP_004647462.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  I6L23_RS04550 (I6L23_04550) rlmN 948316..949551 (-) 1236 WP_004647461.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  I6L23_RS04555 (I6L23_04555) ndk 949674..950105 (-) 432 WP_004647460.1 nucleoside-diphosphate kinase -
  I6L23_RS04560 (I6L23_04560) iscX 950216..950416 (-) 201 WP_004278360.1 Fe-S cluster assembly protein IscX -
  I6L23_RS04565 (I6L23_04565) - 950504..951055 (-) 552 WP_004278361.1 phosphatase PAP2 family protein -
  I6L23_RS04570 (I6L23_04570) - 951076..952356 (-) 1281 WP_004647459.1 glycosyltransferase family 4 protein -
  I6L23_RS04575 (I6L23_04575) - 952625..953041 (-) 417 WP_004647457.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30163.29 Da        Isoelectric Point: 9.2878

>NTDB_id=580848 I6L23_RS04545 WP_004647462.1 947501..948301(-) (pilF) [Acinetobacter lwoffii strain FDAARGOS 1393]
MRNLTSKFTLISTVCVSLVLVACQTPDLGQKDPEKATKVRTQLAVEYLRTGDLDAAKRALDQALESSPRDSQANMMMGVL
LQQEGSKLNLEKADHYFKRAISADPKNAQARNNYGTYLYQLERYNDAIEQFQIAGATLGYDQRFRALENMGRIYLKLGDT
ANAEKSFKQALQANRDSYISMLELAEIFYLNQQFPAATQMYQQFVRGVGQKNQGARALWIGIRTARAGGDQLGMQVLVNQ
LRALFPESQEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=580848 I6L23_RS04545 WP_004647462.1 947501..948301(-) (pilF) [Acinetobacter lwoffii strain FDAARGOS 1393]
TTGAGAAATCTAACATCAAAGTTTACTTTGATTTCAACAGTATGTGTGTCTTTGGTTTTAGTCGCGTGTCAGACGCCAGA
TCTGGGTCAGAAAGACCCTGAAAAGGCCACCAAAGTCCGTACCCAATTGGCGGTAGAATATCTGAGAACAGGTGACCTGG
ATGCAGCTAAACGTGCGCTGGATCAGGCACTTGAAAGCAGTCCGCGTGATTCTCAAGCGAATATGATGATGGGCGTGCTA
CTGCAACAGGAAGGTAGTAAGCTTAATCTCGAAAAAGCAGATCATTATTTCAAGCGTGCGATTTCGGCAGATCCGAAAAA
TGCGCAGGCGCGAAATAATTACGGCACTTATTTATATCAGCTTGAACGCTATAATGATGCAATCGAGCAGTTTCAAATTG
CTGGTGCCACGTTGGGTTATGATCAGCGATTCCGCGCACTGGAAAATATGGGGCGGATTTACCTGAAACTGGGTGATACA
GCAAATGCTGAAAAATCATTCAAACAGGCGCTACAAGCCAATCGCGATTCCTATATTTCAATGTTAGAGTTGGCAGAAAT
ATTTTATTTGAACCAGCAGTTCCCGGCAGCGACACAAATGTATCAACAGTTTGTGCGTGGTGTGGGGCAGAAAAATCAGG
GTGCCCGTGCACTCTGGATTGGCATTCGCACTGCGCGTGCCGGAGGTGATCAGTTGGGTATGCAGGTATTGGTCAACCAG
TTACGTGCACTCTTTCCTGAAAGCCAGGAATACCAACGTTATTTGCAATTACAGTACAGTACTGAGGCCGTATGGAAGTA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(42-81)

Tetratricopeptide repeat (TPR_17)

(97-129)

Tetratricopeptide repeat (TPR_8)

(145-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

78.846

97.744

0.771
  pilF Acinetobacter baylyi ADP1

70.301

100

0.703