Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | I6L67_RS07155 | Genome accession | NZ_CP077320 |
| Coordinates | 1501309..1502679 (-) | Length | 456 a.a. |
| NCBI ID | WP_016177769.1 | Uniprot ID | - |
| Organism | Enterococcus durans strain FDAARGOS 1437 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1490406..1553039 | 1501309..1502679 | within | 0 |
Gene organization within MGE regions
Location: 1490406..1553039
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L67_RS07095 (I6L67_07095) | mscL | 1490728..1491201 (+) | 474 | WP_005875108.1 | large conductance mechanosensitive channel protein MscL | - |
| I6L67_RS07100 (I6L67_07100) | - | 1491324..1491758 (-) | 435 | WP_005875107.1 | GNAT family N-acetyltransferase | - |
| I6L67_RS07105 (I6L67_07105) | - | 1491852..1492097 (-) | 246 | WP_005875105.1 | Veg family protein | - |
| I6L67_RS07110 (I6L67_07110) | - | 1492211..1492789 (-) | 579 | WP_005875103.1 | RNA polymerase sigma factor | - |
| I6L67_RS07115 (I6L67_07115) | - | 1492922..1494219 (+) | 1298 | Protein_1405 | ISL3 family transposase | - |
| I6L67_RS07120 (I6L67_07120) | - | 1494381..1494911 (-) | 531 | WP_005876890.1 | NYN domain-containing protein | - |
| I6L67_RS07125 (I6L67_07125) | rlmB | 1494915..1495778 (-) | 864 | WP_016177768.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| I6L67_RS07130 (I6L67_07130) | - | 1495771..1496166 (-) | 396 | WP_005876893.1 | Mini-ribonuclease 3 | - |
| I6L67_RS07135 (I6L67_07135) | cysS | 1496163..1497575 (-) | 1413 | WP_005876895.1 | cysteine--tRNA ligase | - |
| I6L67_RS07140 (I6L67_07140) | epsC | 1497572..1498108 (-) | 537 | WP_005876897.1 | serine O-acetyltransferase EpsC | - |
| I6L67_RS07145 (I6L67_07145) | gltX | 1498430..1499890 (-) | 1461 | WP_060789778.1 | glutamate--tRNA ligase | - |
| I6L67_RS07150 (I6L67_07150) | - | 1500127..1501272 (-) | 1146 | WP_005876901.1 | PIN/TRAM domain-containing protein | - |
| I6L67_RS07155 (I6L67_07155) | radA | 1501309..1502679 (-) | 1371 | WP_016177769.1 | DNA repair protein RadA | Machinery gene |
| I6L67_RS07160 (I6L67_07160) | - | 1502727..1503260 (-) | 534 | WP_060789779.1 | dUTP diphosphatase | - |
| I6L67_RS07165 (I6L67_07165) | proB | 1503467..1504273 (+) | 807 | WP_005876906.1 | glutamate 5-kinase | - |
| I6L67_RS07170 (I6L67_07170) | - | 1504270..1505514 (+) | 1245 | WP_005876908.1 | glutamate-5-semialdehyde dehydrogenase | - |
| I6L67_RS07175 (I6L67_07175) | - | 1505612..1505956 (+) | 345 | WP_016177770.1 | hypothetical protein | - |
| I6L67_RS07180 (I6L67_07180) | - | 1506351..1506662 (-) | 312 | WP_016177771.1 | hypothetical protein | - |
| I6L67_RS07185 (I6L67_07185) | - | 1506780..1507973 (-) | 1194 | WP_005876916.1 | MFS transporter | - |
| I6L67_RS07190 (I6L67_07190) | - | 1508088..1508603 (+) | 516 | WP_005876918.1 | PadR family transcriptional regulator | - |
| I6L67_RS07195 (I6L67_07195) | - | 1508721..1509161 (-) | 441 | WP_005876920.1 | DUF2798 domain-containing protein | - |
| I6L67_RS07200 (I6L67_07200) | - | 1509512..1510786 (-) | 1275 | WP_005876922.1 | glycoside hydrolase family 73 protein | - |
| I6L67_RS07205 (I6L67_07205) | - | 1511260..1512105 (-) | 846 | WP_005879083.1 | SDR family oxidoreductase | - |
| I6L67_RS07210 (I6L67_07210) | - | 1512232..1512699 (+) | 468 | WP_005879081.1 | Rrf2 family transcriptional regulator | - |
| I6L67_RS07215 (I6L67_07215) | - | 1512827..1514419 (+) | 1593 | WP_016177773.1 | hypothetical protein | - |
| I6L67_RS07220 (I6L67_07220) | - | 1514643..1515896 (+) | 1254 | WP_005879078.1 | ROK family transcriptional regulator | - |
| I6L67_RS07225 (I6L67_07225) | - | 1516196..1517086 (-) | 891 | WP_016177774.1 | phytoene/squalene synthase family protein | - |
| I6L67_RS07230 (I6L67_07230) | - | 1517070..1518562 (-) | 1493 | Protein_1428 | phytoene desaturase family protein | - |
| I6L67_RS07235 (I6L67_07235) | - | 1518829..1519797 (-) | 969 | WP_005879075.1 | tRNA dihydrouridine synthase | - |
| I6L67_RS07240 (I6L67_07240) | - | 1519906..1520427 (-) | 522 | WP_005879074.1 | GNAT family N-acetyltransferase | - |
| I6L67_RS07245 (I6L67_07245) | - | 1520676..1521446 (-) | 771 | WP_005879072.1 | ABC transporter permease | - |
| I6L67_RS07250 (I6L67_07250) | - | 1521439..1522374 (-) | 936 | WP_005879070.1 | ABC transporter ATP-binding protein | - |
| I6L67_RS07255 (I6L67_07255) | - | 1523080..1524729 (-) | 1650 | WP_060789781.1 | MutS-related protein | - |
| I6L67_RS07265 (I6L67_07265) | - | 1526384..1526527 (-) | 144 | Protein_1435 | ISL3 family transposase | - |
| I6L67_RS07270 (I6L67_07270) | rpsI | 1526923..1527315 (-) | 393 | WP_005881201.1 | 30S ribosomal protein S9 | - |
| I6L67_RS07275 (I6L67_07275) | rplM | 1527331..1527759 (-) | 429 | WP_034865780.1 | 50S ribosomal protein L13 | - |
| I6L67_RS07280 (I6L67_07280) | - | 1528138..1529352 (+) | 1215 | WP_005881197.1 | argininosuccinate synthase | - |
| I6L67_RS07285 (I6L67_07285) | argH | 1529410..1530792 (+) | 1383 | WP_005881195.1 | argininosuccinate lyase | - |
| I6L67_RS07290 (I6L67_07290) | - | 1530990..1531457 (-) | 468 | WP_005881193.1 | Dps family protein | - |
| I6L67_RS07295 (I6L67_07295) | - | 1531649..1533181 (-) | 1533 | WP_016177779.1 | gluconokinase | - |
| I6L67_RS07300 (I6L67_07300) | - | 1533258..1533941 (+) | 684 | WP_016177780.1 | prepilin peptidase | - |
| I6L67_RS07305 (I6L67_07305) | msrA | 1534155..1534688 (-) | 534 | WP_005881187.1 | peptide-methionine (S)-S-oxide reductase MsrA | - |
| I6L67_RS07310 (I6L67_07310) | rpoC | 1535189..1538839 (-) | 3651 | WP_016177781.1 | DNA-directed RNA polymerase subunit beta' | - |
| I6L67_RS07315 (I6L67_07315) | rpoB | 1538919..1542536 (-) | 3618 | WP_005881184.1 | DNA-directed RNA polymerase subunit beta | - |
| I6L67_RS07320 (I6L67_07320) | - | 1543276..1544244 (+) | 969 | WP_016177782.1 | ABC transporter substrate-binding protein | - |
| I6L67_RS07325 (I6L67_07325) | - | 1544263..1545168 (+) | 906 | WP_005881180.1 | ABC transporter permease | - |
| I6L67_RS07330 (I6L67_07330) | - | 1545171..1545974 (+) | 804 | WP_005881178.1 | ABC transporter ATP-binding protein | - |
| I6L67_RS07335 (I6L67_07335) | - | 1546149..1547120 (+) | 972 | WP_016177783.1 | biotin--[acetyl-CoA-carboxylase] ligase | - |
| I6L67_RS07340 (I6L67_07340) | - | 1548169..1548798 (+) | 630 | WP_016177784.1 | hypothetical protein | - |
| I6L67_RS07345 (I6L67_07345) | - | 1549509..1550498 (-) | 990 | WP_005875235.1 | polyprenyl synthetase family protein | - |
| I6L67_RS07350 (I6L67_07350) | - | 1550521..1551087 (-) | 567 | WP_005875234.1 | Gx transporter family protein | - |
| I6L67_RS07355 (I6L67_07355) | - | 1551100..1551510 (-) | 411 | WP_005875232.1 | NusG domain II-containing protein | - |
Sequence
Protein
Download Length: 456 a.a. Molecular weight: 49885.50 Da Isoelectric Point: 7.3892
>NTDB_id=580803 I6L67_RS07155 WP_016177769.1 1501309..1502679(-) (radA) [Enterococcus durans strain FDAARGOS 1437]
MAKKAKVQFVCQNCGYVSPKFLGRCPNCGKWNTMVEEIEQDTSDRRTRTSLTGEKAKPTKIAEVTPKKESRVKTKLAELN
RVLGGGVVPGSMILIGGDPGIGKSTLLLQVSQQLADIGGKVLYVSGEESAEQIKLRAERLGSIDTEFYLYAETDMNEISR
AIEQISPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEERLEGATGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAISIASSYKEKGTQPTECFIGEIGLTG
EIRRVSHIEQRVKEVQKLGFTKVYLPKNNLGGWQPPQGIEVVGVATLAETLKRVFR
MAKKAKVQFVCQNCGYVSPKFLGRCPNCGKWNTMVEEIEQDTSDRRTRTSLTGEKAKPTKIAEVTPKKESRVKTKLAELN
RVLGGGVVPGSMILIGGDPGIGKSTLLLQVSQQLADIGGKVLYVSGEESAEQIKLRAERLGSIDTEFYLYAETDMNEISR
AIEQISPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEQHHSFRILRAVKNRFGSTNEIGIFEMHEHGLEEVANPSQIFLEERLEGATGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAISIASSYKEKGTQPTECFIGEIGLTG
EIRRVSHIEQRVKEVQKLGFTKVYLPKNNLGGWQPPQGIEVVGVATLAETLKRVFR
Nucleotide
Download Length: 1371 bp
>NTDB_id=580803 I6L67_RS07155 WP_016177769.1 1501309..1502679(-) (radA) [Enterococcus durans strain FDAARGOS 1437]
ATGGCAAAAAAAGCAAAAGTGCAATTTGTCTGTCAGAACTGTGGGTATGTTTCGCCTAAATTTTTAGGGCGATGCCCGAA
TTGTGGAAAATGGAATACGATGGTGGAAGAAATTGAGCAGGATACTAGCGACCGCAGAACTAGGACGAGCTTAACTGGTG
AAAAAGCGAAGCCCACTAAAATTGCGGAAGTCACCCCCAAAAAAGAATCACGGGTAAAAACGAAACTTGCTGAATTGAAT
CGAGTATTAGGCGGCGGTGTTGTTCCAGGATCAATGATCTTGATCGGTGGAGATCCAGGTATCGGGAAATCGACGTTGTT
ATTACAAGTTTCACAACAACTTGCAGACATTGGTGGTAAAGTATTGTATGTATCTGGTGAAGAAAGTGCTGAGCAAATCA
AGCTACGTGCGGAACGTCTAGGATCGATCGACACGGAATTTTATTTATACGCAGAAACAGATATGAATGAGATCAGCCGA
GCAATTGAACAAATCTCTCCTGATTATGTCATTATTGATTCCATCCAAACAATGACACAACCGGATATCACGAGTGTAGC
AGGTAGCGTGAGTCAAGTGCGGGAAACGACTGCAGAATTATTAAAAATTGCCAAAACGAACGGTATCGCTATTTTTATCG
TTGGACATGTCACAAAAGAAGGGTCGATTGCAGGTCCAAGAATGCTCGAACACATGGTAGATACGGTTCTTTATTTCGAA
GGAGAACAACACCATAGTTTTCGTATTTTAAGAGCGGTGAAGAATCGATTTGGTTCGACAAATGAAATTGGTATTTTTGA
GATGCATGAGCATGGATTGGAGGAAGTGGCGAATCCTTCGCAGATTTTCTTAGAAGAGCGCTTAGAAGGCGCAACCGGTT
CAGCCATCGTGGTGGCGATGGAAGGCACTCGTCCTATTTTAGTAGAGATCCAAGCGCTTGTGACACCCACGATGTTCGGA
AACGCAAAACGAACAACGACTGGCTTAGATTTTAACCGAGTCTCACTGATCATGGCTGTCCTAGAAAAAAGAGCAGGCTT
ATTGTTGCAGAATCAAGATGCTTACTTAAAAGCGGCTGGTGGGGTAAAATTAAATGAGCCGGCCATTGATTTAGCTATTG
CGATCAGTATTGCTTCGAGTTACAAAGAAAAAGGGACACAGCCAACAGAATGCTTTATTGGCGAAATCGGTTTGACTGGT
GAGATCAGACGGGTAAGTCATATTGAGCAGAGGGTCAAAGAAGTACAGAAATTAGGATTCACAAAAGTGTATCTGCCAAA
AAATAATCTTGGCGGATGGCAACCGCCTCAGGGAATCGAAGTAGTGGGCGTAGCCACATTAGCTGAAACATTAAAACGTG
TGTTTCGCTAA
ATGGCAAAAAAAGCAAAAGTGCAATTTGTCTGTCAGAACTGTGGGTATGTTTCGCCTAAATTTTTAGGGCGATGCCCGAA
TTGTGGAAAATGGAATACGATGGTGGAAGAAATTGAGCAGGATACTAGCGACCGCAGAACTAGGACGAGCTTAACTGGTG
AAAAAGCGAAGCCCACTAAAATTGCGGAAGTCACCCCCAAAAAAGAATCACGGGTAAAAACGAAACTTGCTGAATTGAAT
CGAGTATTAGGCGGCGGTGTTGTTCCAGGATCAATGATCTTGATCGGTGGAGATCCAGGTATCGGGAAATCGACGTTGTT
ATTACAAGTTTCACAACAACTTGCAGACATTGGTGGTAAAGTATTGTATGTATCTGGTGAAGAAAGTGCTGAGCAAATCA
AGCTACGTGCGGAACGTCTAGGATCGATCGACACGGAATTTTATTTATACGCAGAAACAGATATGAATGAGATCAGCCGA
GCAATTGAACAAATCTCTCCTGATTATGTCATTATTGATTCCATCCAAACAATGACACAACCGGATATCACGAGTGTAGC
AGGTAGCGTGAGTCAAGTGCGGGAAACGACTGCAGAATTATTAAAAATTGCCAAAACGAACGGTATCGCTATTTTTATCG
TTGGACATGTCACAAAAGAAGGGTCGATTGCAGGTCCAAGAATGCTCGAACACATGGTAGATACGGTTCTTTATTTCGAA
GGAGAACAACACCATAGTTTTCGTATTTTAAGAGCGGTGAAGAATCGATTTGGTTCGACAAATGAAATTGGTATTTTTGA
GATGCATGAGCATGGATTGGAGGAAGTGGCGAATCCTTCGCAGATTTTCTTAGAAGAGCGCTTAGAAGGCGCAACCGGTT
CAGCCATCGTGGTGGCGATGGAAGGCACTCGTCCTATTTTAGTAGAGATCCAAGCGCTTGTGACACCCACGATGTTCGGA
AACGCAAAACGAACAACGACTGGCTTAGATTTTAACCGAGTCTCACTGATCATGGCTGTCCTAGAAAAAAGAGCAGGCTT
ATTGTTGCAGAATCAAGATGCTTACTTAAAAGCGGCTGGTGGGGTAAAATTAAATGAGCCGGCCATTGATTTAGCTATTG
CGATCAGTATTGCTTCGAGTTACAAAGAAAAAGGGACACAGCCAACAGAATGCTTTATTGGCGAAATCGGTTTGACTGGT
GAGATCAGACGGGTAAGTCATATTGAGCAGAGGGTCAAAGAAGTACAGAAATTAGGATTCACAAAAGTGTATCTGCCAAA
AAATAATCTTGGCGGATGGCAACCGCCTCAGGGAATCGAAGTAGTGGGCGTAGCCACATTAGCTGAAACATTAAAACGTG
TGTTTCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus mitis NCTC 12261 |
74.505 |
99.781 |
0.743 |
| radA | Streptococcus mitis SK321 |
74.505 |
99.781 |
0.743 |
| radA | Streptococcus pneumoniae Rx1 |
74.286 |
99.781 |
0.741 |
| radA | Streptococcus pneumoniae D39 |
74.286 |
99.781 |
0.741 |
| radA | Streptococcus pneumoniae R6 |
74.286 |
99.781 |
0.741 |
| radA | Streptococcus pneumoniae TIGR4 |
74.286 |
99.781 |
0.741 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
67.406 |
98.904 |
0.667 |