Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   STO1_RS04925 Genome accession   NZ_AP018338
Coordinates   976811..980086 (-) Length   1091 a.a.
NCBI ID   WP_096422992.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 971811..985086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS04915 (STO1_009530) - 971965..973143 (-) 1179 WP_096422220.1 hypothetical protein -
  STO1_RS04920 (STO1_009540) rexA 973161..976814 (-) 3654 WP_096422222.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  STO1_RS04925 (STO1_009550) rexB 976811..980086 (-) 3276 WP_096422992.1 ATP-dependent nuclease subunit B Machinery gene
  STO1_RS04930 (STO1_009560) tnpA 980317..980781 (-) 465 WP_000057440.1 IS200/IS605 family transposase -
  STO1_RS04935 (STO1_009580) - 980970..981641 (-) 672 WP_007521929.1 CPBP family intramembrane glutamic endopeptidase -
  STO1_RS04940 (STO1_009590) - 981694..981915 (-) 222 WP_007521927.1 hypothetical protein -
  STO1_RS04945 (STO1_009600) - 982169..982978 (+) 810 WP_007521925.1 Cof-type HAD-IIB family hydrolase -
  STO1_RS04950 (STO1_009610) - 983023..983760 (-) 738 WP_096422224.1 TraX family protein -
  STO1_RS04955 (STO1_009620) - 983900..984046 (-) 147 WP_007521921.1 hypothetical protein -
  STO1_RS04960 (STO1_009630) - 984189..984905 (-) 717 WP_096422226.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124780.43 Da        Isoelectric Point: 5.4701

>NTDB_id=58080 STO1_RS04925 WP_096422992.1 976811..980086(-) (rexB) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDLPTKTS
LDDIGLGMAFYKCLAELDPKELRVYGAIKQDPQFIQQLIELYHEMTTAQMSFLDLESLTDEDKREDLLLIFEKVTAYLNQ
SQLAQGSQLSHLIEAIENDKVSSDFSQLALVIDGFTRFSAEEEHVVDLLHRKGVEIVIGAYASKKAYTSPFAEGNLYQAS
VEFLHHLAAKYQTPAQDRSQTHENMDSFDKASRLLESSYDFSELTLDVDEKDRENLQIWSCLTQKEELELVARAIRQKLH
DHPELSYKNFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDAFEQYLRYLGINGLSAFQQTFTKSHLGKFDLEHLNALRLRVLEPLETLFASRKQKTENLLQKWNTFLKNAALSK
QMQELTTTMETLEQERQAEVWKAFCHVLEQFATVFACSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKNRYTMLSLVNAARKQLVLSAPSLLNENE
SKESAYLQELVSFGFSRIEKKIHQKSLSKDDMGSYHSLLSSLVAYHQQAGSNENEQDVTFVKVLARVMGKKLDQKGLTNP
AIPTNPSSKPLEKDTLQALYPVDKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALKLPD
EDSFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPNFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLLAVKSLA
GAVVEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILKGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLSDGKRLVGEKLKQAWFEKMREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=58080 STO1_RS04925 WP_096422992.1 976811..980086(-) (rexB) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACTGAAATCCTAACCAGAGAGGCGGAAGAGCTGGTTGCTGCTGG
TAAGCGAGTTTTCTACATTGCTCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCTATTACCGTCACGCGCTTTGCCCAAATGGCTCGTTACCTGGTTTTAAATGACTTGCCTACAAAGACCAGT
CTTGATGACATCGGCCTTGGGATGGCCTTTTATAAATGCCTTGCTGAACTTGATCCCAAAGAGTTACGAGTTTATGGTGC
TATTAAACAAGACCCTCAATTTATCCAGCAGTTGATTGAACTTTATCACGAGATGACGACTGCTCAGATGAGCTTTTTGG
ACTTGGAAAGTTTGACCGATGAGGACAAGAGAGAAGATTTACTCTTGATTTTTGAAAAAGTGACTGCCTATCTCAATCAA
AGCCAGTTGGCTCAGGGAAGTCAGTTATCCCATTTGATTGAGGCTATTGAGAATGATAAGGTAAGTAGTGATTTTAGTCA
GCTGGCTTTGGTTATCGACGGTTTTACTCGTTTTTCCGCCGAGGAAGAGCATGTGGTGGATCTGCTCCATCGTAAAGGTG
TTGAGATTGTCATTGGTGCTTATGCAAGTAAGAAGGCCTATACCAGTCCGTTCGCTGAAGGCAATCTCTACCAAGCCAGT
GTAGAATTTCTCCATCATTTAGCTGCTAAATACCAAACGCCTGCTCAAGACCGTTCTCAGACTCATGAGAATATGGATAG
TTTTGACAAGGCCTCTCGTTTGCTGGAGTCTTCTTACGACTTTTCAGAACTCACTTTGGATGTTGATGAGAAGGACCGTG
AAAATCTGCAAATCTGGTCTTGTTTGACACAAAAGGAAGAGTTGGAGTTGGTGGCTCGCGCTATTCGTCAGAAATTACAT
GACCATCCAGAACTGAGTTACAAGAATTTCCGTATTTTGCTGGGTGATGTGGCTTCTTACCAGTTATCGTTGAAAACCAT
TTTTGACCAGTACCAGATACCATTCTATCTTGGTAGAAGTGAATCCATGGCTCATCATCCCTTGACCCAGTACGTGGAGT
CTATTTTACGTTTAAAACGTTACCGTTTCCGTCAGGAGGATTTGATTAATCTCCTCAGAACTGGTCTGTATACTGACCTC
AGTCAGGCTGATATTGATGCTTTTGAACAATATCTCCGCTATCTTGGCATCAATGGCTTGTCAGCTTTTCAGCAGACCTT
TACCAAATCCCACCTCGGAAAATTTGATTTGGAACACTTGAATGCCCTTCGTCTGCGAGTTTTGGAGCCACTTGAAACCT
TATTTGCCAGTCGGAAGCAAAAGACTGAAAATCTCTTGCAAAAGTGGAATACTTTTCTAAAAAATGCTGCTTTAAGCAAG
CAGATGCAAGAATTGACAACCACTATGGAAACTCTAGAACAGGAAAGACAAGCCGAAGTTTGGAAGGCTTTCTGCCATGT
TTTAGAACAATTTGCGACGGTTTTTGCTTGTTCACAAGTTAGTCTGGAGGACTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCCCAGTATCGCACCATTCCAGCGACAGTGGACACAGTTCTGGTGCAGAGTTACGATCTGATTGCGCCTCTGACC
GCTGACTTTGTCTACGCCATTGGGCTGACTCAGGATCATTTACCAAAAATTGCGCAAAACACCAGCCTGTTAACAGACGA
AGAAAGACAAAGCCTAAACCAAGCAACTGAAGAGGGAGCACAATTACTGATTGCAAGTAGCGAAAATCTCAAGAAAAATC
GCTATACCATGCTTTCTTTAGTCAACGCCGCTCGTAAGCAGTTGGTGTTGTCAGCACCAAGTCTTCTTAATGAAAATGAG
AGCAAGGAATCGGCCTATCTTCAGGAACTGGTGAGTTTTGGATTTAGCCGGATAGAGAAGAAGATTCATCAAAAAAGTCT
GTCTAAGGATGATATGGGTTCTTATCACAGTCTATTGTCTAGTCTAGTTGCCTATCATCAGCAGGCAGGTTCTAATGAAA
ATGAGCAAGATGTGACCTTTGTAAAGGTTCTTGCGCGTGTCATGGGGAAAAAACTTGACCAAAAAGGTCTTACAAATCCA
GCTATCCCAACTAATCCAAGTAGCAAGCCATTAGAAAAAGATACCTTGCAGGCACTCTATCCAGTTGACAAGGAGTTTTA
CTTGTCTACCTCTGGTTTGACGGAGTTTTACCGCAATGAATATAGTTATTTCCTCCGTTATGTCTTAGGCTTGCAGGAGG
AATTGCGCCTGCGTCCTGATGCTCGAAGTCACGGGAATTTCTTGCATCGTATTTTTGAACGTGCCTTGAAACTGCCTGAT
GAAGATTCCTTTGATCAACGTCTGGAACAAGCTATTCAAGAAACCAGCCAAGAACGTGAATTTGAGGCTATTTATCAGGA
AAGTCTGGAAGCCCAGTTTACCAAGGAAGTTCTTCTTGATGTCGCGCGAACTACGGGCCACATCCTTCGTCATAATCCAG
CTATCGAAACCATCCAAGAGGAGGCAACATTTGGTGGTAAAGATCAGGCCTTTATTCAATTGGATAATGGTCGGAGTGTC
CATGTGCGAGGCAAGGTTGACCGCATTGACCGCCTGAAAGCTGATGGAGCACTAGGAGTAGTGGACTACAAGTCTAGTTT
AACTCAGTTCCAGTTTCCGAATTTCTTTAATGGCCTTAATTCCCAGCTGCCCACCTATCTTGCTGCCCTAAAAAGAGAAG
GGGAGCAGAACTTTTTCGGTGCCATGTACTTGGAAATGGCTGAGCCTGTCCAATCTTTATTAGCTGTTAAAAGTCTGGCA
GGAGCAGTAGTAGAAGCCAGCAAATCAATGAAATACCAAGGACTCTTTTTAGAAAAAGAAAGCAGTCACTTGGGCGAATT
TTATAACAAAAACAAGGCCAATCAGCTGACAGATGAGGAGTTCCAGCTCTTACTAGACTACAATGCCCATCTGTACAAGA
AGGCAGCTGAGAAAATTTTAAAGGGCCAGTTCGCTATCAATCCCTATACCGAAAATGGCAGAAGCATTGCCCCGTACGTT
CAGCAGCATCAAGCTATCACAGGTTTTGAAGCCAATTACCACTTGGGACAAGCCCGTTTCCTTGAGAAATTGGACTTATC
TGATGGCAAGCGTCTGGTAGGAGAAAAACTTAAGCAAGCTTGGTTTGAGAAAATGAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

90.101

100

0.901

Multiple sequence alignment