Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   STO1_RS04855 Genome accession   NZ_AP018338
Coordinates   962641..963711 (-) Length   356 a.a.
NCBI ID   WP_096422214.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 957641..968711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS04835 (STO1_009390) - 957977..959020 (+) 1044 WP_000752714.1 dihydrolipoamide acetyltransferase -
  STO1_RS04840 (STO1_009400) lpdA 959062..960765 (+) 1704 WP_084878281.1 dihydrolipoyl dehydrogenase -
  STO1_RS04845 (STO1_009410) - 960825..961814 (+) 990 WP_049484467.1 lipoate--protein ligase -
  STO1_RS04850 (STO1_009420) - 961920..962561 (+) 642 WP_096422212.1 hypothetical protein -
  STO1_RS04855 (STO1_009430) xerS 962641..963711 (-) 1071 WP_096422214.1 tyrosine recombinase XerS Machinery gene
  STO1_RS09895 (STO1_009440) - 964000..964380 (-) 381 WP_231869992.1 zinc-ribbon domain-containing protein -
  STO1_RS09900 - 964414..964611 (-) 198 WP_231869993.1 zinc-ribbon domain-containing protein -
  STO1_RS04870 (STO1_009450) - 965136..966008 (+) 873 WP_231869994.1 hypothetical protein -
  STO1_RS04880 (STO1_009470) - 966609..967243 (+) 635 Protein_954 IS982 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41171.22 Da        Isoelectric Point: 9.6031

>NTDB_id=58078 STO1_RS04855 WP_096422214.1 962641..963711(-) (xerS) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKMADIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGAPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=58078 STO1_RS04855 WP_096422214.1 962641..963711(-) (xerS) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAACGTGAGATTCTACTGGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTTGCTGTCCCCTATAGTTTTACAACCTTGTACGAATACCTCAAGGAATATGATCGATTTTTCAGCTGGGTTTTGG
AGTCTGGGATTTCAAACGCTGATAAAATGGCTGATATTCCTTTATCGGTCTTGGAAAACATGTCAAAGAAAGATATGGAA
TCCTTTATCCTCTATCTACGAGAACGTCCTTTGCTGAACGCCAATACAACCAAACAAGGTGTCTCTCAGACGACCATCAA
TCGGACCTTGTCAGCACTTTCTAGTCTTTACAAGTATCTAACTGAGGAAGTTGAAAATGACCAAGGAGAGCCCTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACCAAGAAAAAGAAAGAAACACTTGCTGCTAGAGCTGAAAACATCAAACAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTTTAACCTATATCGACCAGGAGTACCCACAACAGCTCTCAAATCGTGCACT
CTCGTCATTCAATAAAAATAAAGAACGTGATTTAGCCATTATTGCCCTTCTCTTGGCGTCTGGTGTCCGCTTATCTGAAG
CTGTTAATCTGGATCTAAGAGACCTCAATCTCAAAATGATGGTTATAGATGTCACTCGAAAAGGGGGCAAACGTGATTCT
GTCAATGTCGCGGCCTTTGCTAAGCCTTATCTTGAAAATTATCTAGCCATTCGAAATCAACGCTATAAGACGGAAAAGAC
AGATACAGCATTATTTCTGACCTTATATCGTGGTGCTCCCAATCGTATCGATGCTTCTAGTGTTGAGAAAATGGTTGCTA
AGTACTCAGAGGATTTCAAAGTCCGTGTAACTCCCCACAAACTACGCCATACCCTGGCGACCAGGCTCTATGATGCTACT
AAATCGCAAGTTTTGGTCAGCCATCAGTTAGGTCATGCTAGCACACAAGTCACTGACCTCTATACCCATATCGTCAATGA
TGAACAAAAGAATGCTTTGGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(68-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.596

100

0.986

Multiple sequence alignment