Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6L35_RS07995 Genome accession   NZ_CP077311
Coordinates   1688157..1689596 (+) Length   479 a.a.
NCBI ID   WP_204482290.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1405     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683157..1694596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L35_RS07965 (I6L35_07965) mlaF 1683734..1684534 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  I6L35_RS07970 (I6L35_07970) - 1684742..1685737 (+) 996 WP_216979961.1 KpsF/GutQ family sugar-phosphate isomerase -
  I6L35_RS07975 (I6L35_07975) kdsC 1685737..1686291 (+) 555 WP_216979962.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  I6L35_RS07980 (I6L35_07980) lptC 1686288..1686848 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  I6L35_RS07985 (I6L35_07985) lptA 1686835..1687362 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  I6L35_RS07990 (I6L35_07990) lptB 1687366..1688091 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  I6L35_RS07995 (I6L35_07995) rpoN/rpoN1 1688157..1689596 (+) 1440 WP_204482290.1 RNA polymerase factor sigma-54 Machinery gene
  I6L35_RS08000 (I6L35_08000) hpf 1689617..1689904 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  I6L35_RS08005 (I6L35_08005) ptsN 1689907..1690353 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6L35_RS08010 (I6L35_08010) rapZ 1690399..1691265 (+) 867 WP_040068818.1 RNase adapter RapZ -
  I6L35_RS08015 (I6L35_08015) npr 1691286..1691558 (+) 273 WP_042024530.1 PTS phosphocarrier protein NPr -
  I6L35_RS08020 (I6L35_08020) - 1691576..1693480 (-) 1905 WP_216979963.1 transcription antiterminator -
  I6L35_RS08025 (I6L35_08025) - 1693586..1694344 (-) 759 WP_216979964.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53715.67 Da        Isoelectric Point: 4.3442

>NTDB_id=580748 I6L35_RS07995 WP_204482290.1 1688157..1689596(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1405]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVTVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=580748 I6L35_RS07995 WP_204482290.1 1688157..1689596(+) (rpoN/rpoN1) [Aeromonas sp. FDAARGOS 1405]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAAGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCATGATGG
GGAAGATAGCGTCTATCAGGGTGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTCA
GCGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCAGTCACCAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGACCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAAGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGTCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCACCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCAG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCTCGCAACGCTCGCAGCAGCACCGACACCCAGTTT
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTGGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491