Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   STO1_RS04330 Genome accession   NZ_AP018338
Coordinates   846557..848224 (+) Length   555 a.a.
NCBI ID   WP_096422097.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 841557..853224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS04300 (STO1_008320) udk 842149..842787 (+) 639 WP_001181369.1 uridine kinase -
  STO1_RS04305 (STO1_008330) xseA 842916..844256 (+) 1341 WP_096422091.1 exodeoxyribonuclease VII large subunit -
  STO1_RS04310 (STO1_008340) - 844234..844446 (+) 213 WP_084944567.1 exodeoxyribonuclease VII small subunit -
  STO1_RS04315 (STO1_008350) - 844443..845318 (+) 876 WP_096422093.1 polyprenyl synthetase family protein -
  STO1_RS04320 (STO1_008360) - 845311..846126 (+) 816 WP_096422095.1 TlyA family RNA methyltransferase -
  STO1_RS04325 (STO1_008370) - 846119..846550 (+) 432 WP_001034390.1 arginine repressor -
  STO1_RS04330 (STO1_008380) recN 846557..848224 (+) 1668 WP_096422097.1 DNA repair protein RecN Machinery gene
  STO1_RS04335 (STO1_008390) - 848225..848953 (+) 729 WP_096422099.1 metallophosphoesterase family protein -
  STO1_RS04340 (STO1_008400) lepA 849032..850855 (+) 1824 WP_007522109.1 translation elongation factor 4 -
  STO1_RS04345 (STO1_008410) - 851002..851625 (+) 624 WP_096422101.1 hypothetical protein -
  STO1_RS04350 (STO1_008420) dprA/cilB/dalA 851707..852555 (+) 849 WP_096422103.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62762.27 Da        Isoelectric Point: 4.5977

>NTDB_id=58068 STO1_RS04330 WP_096422097.1 846557..848224(+) (recN) [Streptococcus oralis subsp. tigurinus strain osk_001]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNLMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQELF
EEQGLEMGDEIIIRREILQNGRSVSRVNGQMVNLSVLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDAAFLDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNEE
FSSLANVRSAMNDMESVEEFDPKYREISSSLSETYYVLEDITKRLEDIIEDLDFDGNRLMQVENRLDLLNTISRKYGGTV
DDVLLYFAKITDEYNLLTGNNLSSEDMETELKKLEVNLVDLAGQLATARHDLAQQLEAEIKQELQDLYMEKAQFQVRFSK
SKFSREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIANYQFFIEKISDEHSTVSTVRLLTLEERVEEVAKMLAGENVTEAALTQARELLQTRMK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=58068 STO1_RS04330 WP_096422097.1 846557..848224(+) (recN) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCGATTTCCCTCAATTTTGAAAAGGGTATGACTGTTTT
GACCGGGGAAACGGGTGCTGGAAAGTCTATCATTATCGACGCTATGAATCTCATGTTGGGGGCTCGTGCAACGACAGACG
TTATTCGTCACGGTGCTCCTAAGGCAGAGATAGAGGGACTTTTCTCAGTTGAAAATAGTCGCCTTTTACAGGAACTTTTT
GAAGAGCAAGGTTTGGAAATGGGTGATGAAATTATCATCCGCCGGGAAATTTTGCAAAATGGTCGTAGTGTTAGTCGTGT
GAATGGTCAGATGGTCAATCTTTCTGTCTTGCGTGCCATTGGGCAACACCTTGTGGATATCCATGGTCAGCATGACCAAG
AGGAGTTAATGCGTCCTCAACTGCACATCCAGATGTTGGATGAGTTTGGTGATGCAGCTTTCTTGGACTTGAAGGAGACC
TATCAGACGAGCTTTGATGCCTATCGTAAAATGCGCAAGCAGGTTTTGGAAGTTAAGAAAAACCAGCAAGAACACAAGGC
TCGTATTGAGATGTTGGAATTTCAAATGGCAGAGATTGAGGCTGCAAACTTGCAGGCTGGTGAAGACTTGGCTCTCAACC
AAGAACGAGATAAGCTTCTCAATCATAAGAACATTGCGGATACGCTAACCAATGCCTATAGTATGTTGGACAATGAGGAA
TTCTCCAGTCTTGCTAATGTCCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAATTTGACCCTAAATACCGTGAAAT
TTCAAGTTCTCTATCAGAGACCTACTATGTTTTAGAAGATATTACAAAGCGTTTGGAAGATATTATTGAAGATCTAGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGCCTAGATCTTCTGAATACTATTTCCCGTAAGTACGGTGGAACTGTG
GATGATGTCCTGCTTTATTTTGCTAAGATTACGGATGAGTACAATCTCTTGACGGGTAATAACCTTTCTTCCGAAGACAT
GGAAACAGAGCTCAAGAAATTGGAAGTTAATCTTGTTGATTTGGCAGGGCAGCTTGCAACAGCTCGTCATGATTTGGCCC
AGCAGCTTGAAGCAGAAATTAAACAAGAACTGCAAGACCTCTATATGGAGAAGGCTCAATTTCAAGTTCGCTTTAGTAAG
AGCAAGTTCAGCCGTGAGGGGAATGAAACAGTTGAGTTTTACATTTCCACCAACCCTGGTGAAGACTTTAAACCCTTGGT
TAAAGTTGCGTCCGGTGGGGAATTATCCCGCCTCATGCTAGCTATTAAATCCGCCTTTTCTCGTAAGGAAGGTAAGACTA
GTATTGTCTTTGATGAGGTGGATACAGGTGTTTCAGGTCGTGTGGCCCAAGCCATCGCTCAAAAGATTCATAAGATTGGT
CAGCATGGTCAGGTTCTTGCTATTTCTCATCTACCACAAGTAATTGCCATCGCGAATTATCAATTCTTTATTGAGAAGAT
TAGCGATGAGCACTCAACAGTTTCGACTGTTCGTCTCTTAACTTTAGAAGAGCGAGTAGAGGAAGTCGCTAAAATGTTGG
CTGGGGAAAATGTAACCGAAGCTGCCCTTACTCAAGCTAGAGAATTATTGCAAACGAGGATGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44

Multiple sequence alignment