Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6L52_RS15200 Genome accession   NZ_CP077300
Coordinates   3191936..3192550 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain FDAARGOS 1422     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3186936..3197550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L52_RS15185 (I6L52_15185) helD 3187160..3189214 (-) 2055 WP_151222798.1 DNA helicase IV -
  I6L52_RS15190 (I6L52_15190) - 3189340..3189786 (+) 447 WP_016152485.1 YccF domain-containing protein -
  I6L52_RS15195 (I6L52_15195) yccS 3189805..3191958 (+) 2154 WP_049283246.1 YccS family putative transporter -
  I6L52_RS15200 (I6L52_15200) sxy/tfoX 3191936..3192550 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  I6L52_RS15205 (I6L52_15205) sulA 3192767..3193276 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  I6L52_RS15210 (I6L52_15210) ompA 3193634..3194692 (+) 1059 WP_046275731.1 porin OmpA -
  I6L52_RS15215 (I6L52_15215) matP 3194791..3195243 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  I6L52_RS15220 (I6L52_15220) - 3195429..3197189 (+) 1761 WP_151222799.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=580636 I6L52_RS15200 WP_016152483.1 3191936..3192550(-) (sxy/tfoX) [Citrobacter braakii strain FDAARGOS 1422]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=580636 I6L52_RS15200 WP_016152483.1 3191936..3192550(-) (sxy/tfoX) [Citrobacter braakii strain FDAARGOS 1422]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAACAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681