Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6L53_RS13805 Genome accession   NZ_CP077291
Coordinates   2918240..2918869 (-) Length   209 a.a.
NCBI ID   WP_042319983.1    Uniprot ID   A0A8H9TU51
Organism   Citrobacter farmeri strain FDAARGOS 1423     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2913240..2923869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L53_RS13790 (I6L53_13790) helD 2913481..2915535 (-) 2055 WP_042319976.1 DNA helicase IV -
  I6L53_RS13795 (I6L53_13795) - 2915659..2916105 (+) 447 WP_042319980.1 YccF domain-containing protein -
  I6L53_RS13800 (I6L53_13800) yccS 2916124..2918286 (+) 2163 WP_042319981.1 YccS family putative transporter -
  I6L53_RS13805 (I6L53_13805) sxy/tfoX 2918240..2918869 (-) 630 WP_042319983.1 TfoX/Sxy family DNA transformation protein Regulator
  I6L53_RS13810 (I6L53_13810) sulA 2919087..2919596 (+) 510 WP_042319986.1 SOS-induced cell division inhibitor SulA -
  I6L53_RS13815 (I6L53_13815) ompA 2919953..2921008 (+) 1056 WP_042319987.1 porin OmpA -
  I6L53_RS13820 (I6L53_13820) matP 2921092..2921544 (-) 453 WP_042319990.1 macrodomain Ter protein MatP -
  I6L53_RS13825 (I6L53_13825) - 2921730..2923490 (+) 1761 WP_042319993.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24185.15 Da        Isoelectric Point: 9.2625

>NTDB_id=580588 I6L53_RS13805 WP_042319983.1 2918240..2918869(-) (sxy/tfoX) [Citrobacter farmeri strain FDAARGOS 1423]
MKVHSYDRIYKSQEYLSSLGTIHFRSLFGSYSLTIKNTVFAMVANGELYLRACEQSVQYCVQHSPVWLTFLKRGRPVMLN
YYQVDESLWRDQQQLIQLSKFSLDAALQEKLTRCSQQRLKDLPNMTFHLESLLNDAGIYDVATLRMLGAKMCWLRLRQMN
KSITDKVLFNLEGAIYGIHEAALPAIRRQELALWVKSLSPALVSVEKIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=580588 I6L53_RS13805 WP_042319983.1 2918240..2918869(-) (sxy/tfoX) [Citrobacter farmeri strain FDAARGOS 1423]
ATGAAAGTACACTCCTATGACAGGATCTATAAATCACAGGAATATTTATCTTCTCTGGGGACGATCCATTTCCGTTCACT
GTTCGGCAGCTACAGTCTGACTATCAAGAATACCGTCTTTGCGATGGTCGCGAATGGTGAGCTTTATCTGCGTGCCTGTG
AGCAAAGCGTACAGTATTGTGTGCAGCATTCTCCAGTATGGCTGACATTTCTTAAACGCGGGCGTCCGGTCATGCTCAAC
TATTATCAGGTTGATGAAAGTCTTTGGCGCGACCAACAACAGTTGATCCAGTTATCGAAGTTTTCGCTGGATGCCGCGTT
ACAGGAGAAGTTGACTCGCTGTTCTCAGCAGCGTCTTAAGGATCTCCCCAATATGACCTTTCATCTGGAGAGTTTGCTGA
ATGACGCGGGGATCTACGACGTCGCCACTCTGCGTATGCTGGGGGCTAAAATGTGCTGGTTGCGACTTCGACAGATGAAT
AAATCCATCACTGACAAGGTGCTTTTTAATCTTGAAGGGGCCATTTATGGCATTCATGAAGCGGCGCTCCCGGCGATACG
TCGCCAGGAGCTTGCTCTGTGGGTTAAGTCGCTTTCGCCGGCGCTGGTGTCTGTGGAGAAGATTGAGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

71.5

95.694

0.684