Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   I6L58_RS15430 Genome accession   NZ_CP077290
Coordinates   3263429..3264862 (-) Length   477 a.a.
NCBI ID   WP_088208449.1    Uniprot ID   -
Organism   Enterobacter cancerogenus strain FDAARGOS 1428     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3258429..3269862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L58_RS15400 (I6L58_15400) elbB 3259961..3260614 (+) 654 WP_088208447.1 isoprenoid biosynthesis glyoxalase ElbB -
  I6L58_RS15405 (I6L58_15405) mtgA 3260611..3261336 (+) 726 WP_088208448.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  I6L58_RS15410 (I6L58_15410) npr 3261376..3261648 (-) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  I6L58_RS15415 (I6L58_15415) rapZ 3261645..3262499 (-) 855 WP_006178792.1 RNase adapter RapZ -
  I6L58_RS15420 (I6L58_15420) ptsN 3262545..3263036 (-) 492 WP_006178791.1 PTS IIA-like nitrogen regulatory protein PtsN -
  I6L58_RS15425 (I6L58_15425) hpf 3263119..3263406 (-) 288 WP_006178790.1 ribosome hibernation promoting factor -
  I6L58_RS15430 (I6L58_15430) rpoN/rpoN1 3263429..3264862 (-) 1434 WP_088208449.1 RNA polymerase factor sigma-54 Machinery gene
  I6L58_RS15435 (I6L58_15435) lptB 3264910..3265635 (-) 726 WP_006178788.1 LPS export ABC transporter ATP-binding protein -
  I6L58_RS15440 (I6L58_15440) lptA 3265642..3266196 (-) 555 WP_006178787.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  I6L58_RS15445 (I6L58_15445) lptC 3266165..3266740 (-) 576 WP_006178786.1 LPS export ABC transporter periplasmic protein LptC -
  I6L58_RS15450 (I6L58_15450) kdsC 3266737..3267303 (-) 567 WP_058609399.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  I6L58_RS15455 (I6L58_15455) kdsD 3267318..3268304 (-) 987 WP_006178784.1 arabinose-5-phosphate isomerase KdsD -
  I6L58_RS15460 (I6L58_15460) - 3268318..3269295 (-) 978 WP_088208450.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54144.01 Da        Isoelectric Point: 4.3332

>NTDB_id=580564 I6L58_RS15430 WP_088208449.1 3263429..3264862(-) (rpoN/rpoN1) [Enterobacter cancerogenus strain FDAARGOS 1428]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQTQDAEMLDTVDALEQKEMPD
ELPLDASWDELYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESIGDEDVELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNSDSIPRLQINQQYASMCTSVRNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTLLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=580564 I6L58_RS15430 WP_088208449.1 3263429..3264862(-) (rpoN/rpoN1) [Enterobacter cancerogenus strain FDAARGOS 1428]
ATGAAGCAAGGTTTGCAATTAAGGCTGAGCCAGCAACTGGCGATGACGCCGCAGCTCCAGCAGGCGATCCGTCTGCTGCA
GCTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAATCCGTTGCTGGAGCAAACCGATCTTCATG
ACGAGGTAGACACCCAGCAAACGCAAGACGCAGAAATGCTCGACACCGTTGATGCGCTCGAACAAAAAGAGATGCCGGAC
GAGCTTCCGCTGGATGCCAGCTGGGATGAACTCTACACCGCCGGTACCCCTTCCGGAACGCGTGCAGACTACCAGGACGA
CGAGCTGCCGGTCTACCAGGGCGAAACCACCCAGTCTCTGCAGGATTACCTGATGTGGCAGGTGGAGCTTACGCCGTTCT
CCGATACCGATCGCGCCATTGCGACCTCCATTGTCGATGCCGTGGATGACACAGGCTATCTGACCGTCACGCTGGACGAC
ATTCTGGAAAGCATCGGCGACGAAGACGTTGAGCTGGAAGAAATTGAAGCCGTGTTAAAGCGCATCCAGCGCTTCGACCC
GGTCGGTGTGGCGGCGAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCGCAGTTCGCCAAAGAGACGCCGTGGATTG
ACGAAGCCCGCTTAATCATCAGCGATCATCTGGATCTGCTCGCCAACCATGATTTCCGTTCGCTGATGCGCGTCACGCGT
CTGAAAGAAGAGGTGCTGAAAGAGGCGGTGAATTTAATTCAGTCCCTCGATCCGCGTCCCGGCCAGTCGATCCAGACCAG
CGAACCGGAATACGTGATCCCTGACGTGCTGGTGCGAAAGCATAACGGTCGCTGGGTGGTTGAACTGAATTCAGATAGCA
TCCCTCGTTTGCAAATTAACCAGCAGTACGCCTCCATGTGCACCAGCGTTCGCAACGACTCCGACAATCAATATATTCGT
AGCAACCTTCAGGAAGCGCGATGGTTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTGCGCGTAAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTCGAGCAGGGCGAAGAATTTATGAAGCCGATGGTGCTGGCAGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGTCCGCGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAAGGCGGCGGCGAAGCCTCGTCAACGGCAATCCGTGCACTGGTGAAGAAGTT
GATCGCCGCGGAAAACCCCGCGAAGCCACTGAGCGACAGTAAGTTGACCACCCTTCTCTCCGATCAGGGTATTATGGTGG
CTCGTCGTACCGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.743

100

0.484