Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   STO1_RS02540 Genome accession   NZ_AP018338
Coordinates   507403..509622 (+) Length   739 a.a.
NCBI ID   WP_172843659.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 502403..514622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS02515 (STO1_004930) - 503391..504173 (-) 783 WP_084939224.1 DUF4037 domain-containing protein -
  STO1_RS02520 (STO1_004940) - 504303..504962 (-) 660 WP_096421834.1 amino acid ABC transporter permease -
  STO1_RS02525 (STO1_004950) - 504972..505649 (-) 678 WP_096421836.1 amino acid ABC transporter permease -
  STO1_RS02530 (STO1_004960) - 505662..506456 (-) 795 WP_084939221.1 transporter substrate-binding domain-containing protein -
  STO1_RS02535 (STO1_004970) - 506467..507225 (-) 759 WP_045617531.1 amino acid ABC transporter ATP-binding protein -
  STO1_RS02540 (STO1_004980) recJ 507403..509622 (+) 2220 WP_172843659.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  STO1_RS02545 (STO1_004990) - 509799..511460 (+) 1662 WP_096421838.1 ribonuclease J -
  STO1_RS02550 (STO1_005000) - 511529..512308 (+) 780 WP_096421840.1 alpha/beta hydrolase -
  STO1_RS02555 (STO1_005010) - 512413..513126 (+) 714 WP_096421842.1 M57 family metalloprotease -
  STO1_RS02560 (STO1_005020) - 513352..514566 (+) 1215 WP_007520467.1 aminoacyltransferase -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 82514.96 Da        Isoelectric Point: 4.3093

>NTDB_id=58055 STO1_RS02540 WP_172843659.1 507403..509622(+) (recJ) [Streptococcus oralis subsp. tigurinus strain osk_001]
MITPTYEWQFAPQVEDADFTKIAKKAGLGPEVARLLFERGIQDEESLKKFLEPSLEDLHDPYLLHDMDKAVERIRQAIEE
GEDILIYGDYDADGMTSASIVKESLEQLGAECRVYLPNRFTDGYGPNASVYKYFIEQEGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPETLPDAYAIVHPEHPDADYPFKQLAGCGVAFKLACALLEEVQVELLDLVAIGTIADMVSLTDENR
IMVQYGLEMLGHTQRIGLQEMLDMAGIAANEVTEETVGFQIAPRLNALGRLDDPNPAIDLLTGFDDEEAHEIALMIHQKN
EERKEIVQSIYEEAKTMVDPEKKVQVLAKEGWNPGVLGIVAGRLLEELGQTVIVLNIEDGRAKGSARSVEAVDIFEALDP
HRDLFIAFGGHAGAAGMTLEVEKLSDLSQVLEDYVREKGADAGGKNKLNLDEELDLETLSLETVKSFERLAPFGMDNQKP
VFYIKDFHVESARTMGAGNAHLKLKISKGEASFEVVAFGQGRWATEFAQTKNLELAVTLSVNQWNGQTALQLMMVDARVE
GVQLFNIRGKNAVLPEGVPVLDFSGELPDLATSEAVVVKTIPEDITLLKTIFQEQHFSAVYFKNDIDKAYYLTGYGTREQ
FAKLYKTIYQFPEFDIRYKLKDLATYLNIQQILLVKMIQVFEELDFVTIKDGVMTVNKEAPKREIGESQIYQNLKQTVKD
QEMMALGTVQEMYDFLMEK

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=58055 STO1_RS02540 WP_172843659.1 507403..509622(+) (recJ) [Streptococcus oralis subsp. tigurinus strain osk_001]
TTGATAACTCCTACTTATGAATGGCAGTTTGCCCCGCAGGTTGAAGATGCGGATTTTACAAAGATAGCCAAGAAGGCTGG
ACTGGGTCCCGAGGTAGCACGGTTATTATTTGAAAGAGGGATTCAGGACGAAGAAAGCCTGAAAAAGTTTTTAGAACCTT
CCTTGGAGGACTTGCATGACCCCTATCTGCTCCATGATATGGACAAGGCAGTGGAACGGATTCGTCAGGCCATTGAAGAA
GGGGAAGACATTCTCATCTATGGAGACTACGATGCGGACGGTATGACTTCAGCTTCGATTGTGAAGGAAAGTTTGGAACA
GCTTGGCGCCGAGTGTCGAGTTTATTTGCCCAATCGTTTTACAGATGGCTATGGTCCCAATGCCAGTGTCTATAAATACT
TTATCGAGCAAGAGGGAATTTCCTTGATTGTGACAGTGGATAATGGAGTTGCTGGTCACGAGGCCATTGAATTGGCCCAG
TCTATGGGAGTGGATGTCATTGTGACTGACCACCATTCCATGCCGGAAACCCTTCCTGATGCCTATGCGATTGTTCACCC
TGAACATCCAGATGCGGACTATCCTTTCAAACAGTTGGCCGGATGCGGAGTGGCTTTCAAGCTAGCTTGCGCCCTTTTAG
AAGAAGTGCAAGTGGAATTGCTTGATTTGGTCGCTATCGGTACCATTGCAGATATGGTGAGCTTGACAGATGAAAACCGT
ATCATGGTTCAATATGGTCTGGAAATGCTGGGGCATACTCAGCGTATTGGCCTACAAGAAATGCTGGATATGGCTGGGAT
TGCTGCTAATGAAGTAACAGAAGAAACGGTTGGTTTCCAGATTGCCCCTCGTTTAAATGCCTTGGGGCGCTTGGATGATC
CCAATCCTGCCATTGATTTGTTGACTGGGTTTGACGACGAGGAAGCACATGAGATTGCCCTCATGATTCATCAGAAAAAC
GAAGAGCGCAAGGAAATCGTTCAGTCAATCTATGAAGAAGCTAAGACCATGGTGGATCCTGAGAAGAAGGTCCAGGTTTT
GGCCAAGGAAGGCTGGAATCCTGGCGTTCTGGGTATCGTGGCTGGGCGCTTGCTGGAAGAACTAGGGCAGACAGTTATCG
TTCTCAATATAGAAGATGGTCGTGCCAAGGGTAGCGCTCGTAGTGTGGAAGCGGTCGATATTTTTGAAGCCTTAGATCCC
CACCGAGATCTCTTTATCGCCTTTGGCGGCCATGCTGGTGCAGCTGGAATGACGCTGGAAGTTGAGAAACTTTCAGATTT
ATCTCAGGTTTTGGAAGACTATGTCCGTGAAAAAGGTGCAGATGCTGGTGGCAAGAACAAGTTAAATCTAGATGAAGAGC
TGGATTTGGAGACTCTTAGTTTAGAAACGGTTAAAAGCTTTGAACGCTTGGCACCCTTTGGGATGGATAATCAGAAACCT
GTCTTTTATATCAAGGATTTTCATGTCGAAAGTGCCCGTACTATGGGAGCAGGCAATGCCCACCTCAAACTAAAAATTTC
CAAGGGTGAGGCAAGCTTTGAAGTGGTGGCCTTTGGACAAGGTAGATGGGCAACAGAGTTTGCTCAAACCAAGAATCTAG
AATTGGCAGTCACCCTGTCTGTCAATCAATGGAATGGCCAAACTGCCCTCCAGTTGATGATGGTGGATGCGCGTGTGGAA
GGTGTTCAACTCTTTAACATTCGTGGGAAGAATGCAGTCTTGCCAGAAGGGGTTCCAGTCTTGGATTTCTCTGGAGAGTT
GCCAGATCTAGCGACTAGTGAAGCGGTTGTTGTGAAAACCATTCCTGAAGATATTACCTTGCTGAAGACGATTTTTCAGG
AGCAACATTTCTCAGCTGTCTATTTCAAGAATGACATTGACAAGGCCTACTATCTGACAGGTTATGGAACTAGAGAACAG
TTTGCAAAATTGTACAAGACCATTTACCAGTTCCCAGAGTTTGATATTCGCTACAAGCTCAAAGATTTGGCAACTTATCT
CAATATTCAACAAATCTTGCTGGTCAAGATGATCCAAGTATTTGAAGAGCTGGACTTTGTGACGATCAAAGATGGTGTCA
TGACAGTCAATAAAGAAGCACCAAAGCGAGAGATAGGAGAAAGTCAGATTTACCAAAATCTCAAGCAAACTGTCAAAGAC
CAAGAAATGATGGCGCTGGGTACCGTGCAAGAAATGTATGATTTTTTAATGGAAAAATAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(84-228)

DHHA1 domain (DHHA1)

(317-434)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-735)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

96.752

100

0.968
  recJ Bacillus subtilis subsp. subtilis str. 168

36.788

100

0.384

Multiple sequence alignment