Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SPN034156_RS08560 Genome accession   NC_021006
Coordinates   1592632..1593363 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN034156     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587632..1598363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034156_RS08535 (SPN034156_15350) - 1589518..1589793 (+) 276 WP_000386177.1 hypothetical protein -
  SPN034156_RS08540 (SPN034156_15360) dnaJ 1589998..1591134 (+) 1137 WP_001841444.1 molecular chaperone DnaJ -
  SPN034156_RS12375 - 1591456..1591695 (-) 240 WP_001813906.1 hypothetical protein -
  SPN034156_RS08550 (SPN034156_15370) - 1591857..1592144 (-) 288 WP_000777760.1 hypothetical protein -
  SPN034156_RS08555 (SPN034156_15380) - 1592154..1592564 (-) 411 WP_001278301.1 HIT family protein -
  SPN034156_RS08560 (SPN034156_15390) pptA 1592632..1593363 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  SPN034156_RS08565 (SPN034156_15400) - 1593360..1594409 (+) 1050 WP_000653771.1 ABC transporter permease -
  SPN034156_RS08570 (SPN034156_15410) - 1594577..1594906 (-) 330 WP_000132572.1 hypothetical protein -
  SPN034156_RS08575 (SPN034156_15420) - 1595181..1595519 (+) 339 WP_000682122.1 LytTR family DNA-binding domain-containing protein -
  SPN034156_RS08580 (SPN034156_15430) comE/blpR 1595524..1596261 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  SPN034156_RS08585 (SPN034156_15440) - 1596274..1597614 (+) 1341 WP_000275284.1 sensor histidine kinase -
  SPN034156_RS08590 (SPN034156_15450) blpC 1597659..1597814 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=58055 SPN034156_RS08560 WP_000889923.1 1592632..1593363(+) (pptA) [Streptococcus pneumoniae SPN034156]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=58055 SPN034156_RS08560 WP_000889923.1 1592632..1593363(+) (pptA) [Streptococcus pneumoniae SPN034156]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment