Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6L73_RS08565 Genome accession   NZ_CP077279
Coordinates   1842732..1843328 (+) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain FDAARGOS 1443     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1837732..1848328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L73_RS08540 (I6L73_08540) - 1837845..1839602 (-) 1758 WP_004201429.1 Lon protease family protein -
  I6L73_RS08545 (I6L73_08545) matP 1839788..1840240 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  I6L73_RS08550 (I6L73_08550) ompA 1840451..1841521 (-) 1071 WP_004201430.1 porin OmpA -
  I6L73_RS08555 (I6L73_08555) sulA 1841874..1842383 (-) 510 WP_004201431.1 SOS-induced cell division inhibitor SulA -
  I6L73_RS08560 (I6L73_08560) - 1842409..1842714 (+) 306 WP_153650437.1 hypothetical protein -
  I6L73_RS08565 (I6L73_08565) sxy/tfoX 1842732..1843328 (+) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  I6L73_RS08570 (I6L73_08570) yccS 1843339..1845474 (-) 2136 WP_136084580.1 YccS family putative transporter -
  I6L73_RS08575 (I6L73_08575) - 1845492..1845938 (-) 447 WP_004201437.1 YccF domain-containing protein -
  I6L73_RS08580 (I6L73_08580) helD 1846063..1848117 (+) 2055 WP_004201438.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=580536 I6L73_RS08565 WP_004201433.1 1842732..1843328(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain FDAARGOS 1443]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=580536 I6L73_RS08565 WP_004201433.1 1842732..1843328(+) (sxy/tfoX) [Klebsiella quasipneumoniae strain FDAARGOS 1443]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCATTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCCGATGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5