Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6L54_RS17015 Genome accession   NZ_CP077262
Coordinates   3474250..3474864 (-) Length   204 a.a.
NCBI ID   WP_005123517.1    Uniprot ID   A0A6N6K490
Organism   Citrobacter pasteurii strain FDAARGOS 1424     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3469250..3479864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L54_RS17000 (I6L54_17005) helD 3469474..3471528 (-) 2055 WP_040231830.1 DNA helicase IV -
  I6L54_RS17005 (I6L54_17010) - 3471654..3472100 (+) 447 WP_005123514.1 YccF domain-containing protein -
  I6L54_RS17010 (I6L54_17015) yccS 3472119..3474272 (+) 2154 WP_005123516.1 YccS family putative transporter -
  I6L54_RS17015 (I6L54_17020) sxy/tfoX 3474250..3474864 (-) 615 WP_005123517.1 TfoX/Sxy family DNA transformation protein Regulator
  I6L54_RS17020 (I6L54_17025) sulA 3475081..3475590 (+) 510 WP_040231828.1 SOS-induced cell division inhibitor SulA -
  I6L54_RS17025 (I6L54_17030) ompA 3475946..3476995 (+) 1050 WP_005123519.1 porin OmpA -
  I6L54_RS17030 (I6L54_17035) matP 3477094..3477546 (-) 453 WP_005123520.1 macrodomain Ter protein MatP -
  I6L54_RS17035 (I6L54_17040) - 3477732..3479492 (+) 1761 WP_005123521.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23408.16 Da        Isoelectric Point: 9.5527

>NTDB_id=580446 I6L54_RS17015 WP_005123517.1 3474250..3474864(-) (sxy/tfoX) [Citrobacter pasteurii strain FDAARGOS 1424]
MKKLSYARIYKSQEYLESLGTIRYRSLFGGYSLTVEDTVFAMVASGELYLRACEQSAQYCVKHSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSRYSLDAALKEKQSRFAQHRLRGLPNMTFHLETLLNEAGIKDESTLRMLGAKMCWLKLRQIN
PALTVKILYALEGAIGGIHEAALPAIRRQELVEWVSSLTPEPVY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=580446 I6L54_RS17015 WP_005123517.1 3474250..3474864(-) (sxy/tfoX) [Citrobacter pasteurii strain FDAARGOS 1424]
ATGAAAAAACTTTCTTATGCAAGGATCTATAAATCACAAGAATATCTGGAGTCACTGGGGACTATTCGTTATCGATCGCT
GTTTGGGGGTTATAGCCTGACAGTCGAGGATACGGTGTTCGCCATGGTCGCCAGTGGCGAGCTATATCTTCGGGCCTGTG
AACAGAGCGCGCAGTACTGTGTAAAACATTCCCCTGTCTGGCTGACATTTATAAAACGTGGACGTCCGGTGGTGCTCAAT
TATTATCAGGTGAACGATACGCTGTGGCAAAACCAGCAACAACTGGTGTCGCTATCACGGTATTCACTGGATGCGGCGTT
AAAAGAAAAGCAAAGTCGTTTTGCACAGCATCGCCTGCGTGGACTGCCGAACATGACATTTCATCTGGAAACCCTGCTGA
ATGAAGCAGGTATAAAAGATGAAAGCACATTACGCATGTTGGGTGCAAAAATGTGCTGGTTGAAACTGCGACAGATTAAT
CCCGCCCTGACGGTGAAAATACTCTATGCCCTTGAAGGCGCGATTGGGGGCATTCATGAGGCGGCGCTCCCGGCGATTCG
CCGCCAGGAGCTTGTGGAGTGGGTGAGTTCTCTTACGCCTGAACCGGTGTACTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N6K490

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.139

98.529

0.711