Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I6L85_RS09795 Genome accession   NZ_CP077248
Coordinates   1990742..1992103 (-) Length   453 a.a.
NCBI ID   WP_111723160.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1985742..1997103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS09775 (I6L85_09775) - 1986305..1987504 (-) 1200 WP_008808200.1 argininosuccinate synthase -
  I6L85_RS09780 (I6L85_09780) gltX 1987680..1989137 (-) 1458 WP_111723161.1 glutamate--tRNA ligase -
  I6L85_RS09785 (I6L85_09785) - 1989287..1989781 (-) 495 WP_008808198.1 carbonic anhydrase -
  I6L85_RS09790 (I6L85_09790) - 1989919..1990629 (-) 711 WP_008808197.1 TIGR00266 family protein -
  I6L85_RS09795 (I6L85_09795) radA 1990742..1992103 (-) 1362 WP_111723160.1 DNA repair protein RadA Machinery gene
  I6L85_RS09800 (I6L85_09800) - 1992116..1992631 (-) 516 WP_111723159.1 histidine phosphatase family protein -
  I6L85_RS09805 (I6L85_09805) - 1992650..1993108 (-) 459 WP_045772688.1 isochorismatase family protein -
  I6L85_RS09810 (I6L85_09810) - 1993118..1993561 (-) 444 WP_008808193.1 dUTP diphosphatase -
  I6L85_RS09815 (I6L85_09815) - 1993646..1994095 (-) 450 WP_045505259.1 8-oxo-dGTP diphosphatase -
  I6L85_RS09820 (I6L85_09820) - 1994370..1995059 (-) 690 WP_045634457.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  I6L85_RS09825 (I6L85_09825) - 1995238..1997007 (-) 1770 WP_111723157.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49522.81 Da        Isoelectric Point: 5.5895

>NTDB_id=580295 I6L85_RS09795 WP_111723160.1 1990742..1992103(-) (radA) [Streptococcus gordonii strain FDAARGOS 1455]
MAKKKTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTEIE
KIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGER
QHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGEIR
RVNRIEQRINEAAKLGFTKVYAPKNSLNGLKVPDNIQVIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=580295 I6L85_RS09795 WP_111723160.1 1990742..1992103(-) (radA) [Streptococcus gordonii strain FDAARGOS 1455]
ATCGCTAAGAAAAAAACAACCTTTGTCTGTCAAAATTGTGAATACCATTCGCCCAAGTATCTAGGTCGCTGTCCTAATTG
TGGAGCTTGGTCTTCTTTCGTTGAGGAAGTAGAGGCTGCAGAAGTCAAGCATGCTCGTGTTTCCTTGACGGGTGAAAAGA
CCCGACCTATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAACCGGACTAAGACGGAAATGGACGAGTTCAACCGTGTG
CTGGGTGGTGGCGTCGTGCCTGGCAGTCTGGTTCTGATTGGTGGAGATCCTGGTATCGGGAAGTCCACCCTGCTTTTGCA
GGTGTCCACTCAGCTTTCTCAACAGGGTACCGTCCTTTATGTCAGTGGGGAGGAATCAGCTGAGCAGATTAAGTTGCGGG
CGGAACGCCTCGGTGATATTGACAGTGAATTTTACCTCTACGCTGAGACCAATATGCAAAATATCCGCACAGAGATTGAG
AAAATCAAGCCAGATTTTCTGATTATCGACTCTATACAGACGGTGATGTCGCCGGAAATTTCCAGTGTCCAAGGCTCTGT
TTCTCAGGTCCGAGAGGTGACAGCCGAGCTCATGCAGCTGGCCAAGACCAATAATATCGCGACCTTTATTGTTGGTCACA
TGACCAAGGAAGGAACCTTAGCTGGTCCTCGGACGCTAGAGCACATGGTGGATACCGTGCTTTATTTTGAGGGTGAACGT
CAGCATACTTTCCGTATCTTGAGAGCAGTCAAGAACCGTTTTGGCTCGACCAATGAGATTGGCATTTTTGAGATGCAATC
TGGCGGGCTAGTTGAGGTTGTCAATCCCAGTGAAGTCTTTTTAGAAGAGCGCCTGGACGGCGCGACAGGATCTTCTATTG
TCGTGACCATGGAAGGAACGCGGCCAATTTTAGCAGAGGTGCAGGCTTTGGTGACACCGACCATGTTTGGCAATGCCAAG
CGAACCACGACCGGACTGGACTTTAACCGAGCTAGCCTCATCATGGCGGTTCTGGAAAAGAGGGCGGGGCTCCTTCTGCA
AAATCAAGACGCCTATCTCAAATCAGCTGGGGGTGTCAAGCTAGATGAGCCAGCCATTGATTTGGCGGTAGCGGTGGCCA
TTGCTTCCAGCTACAAAGATCTACCTACCAATCCTCAAGAGTGCTTTATCGGTGAAATTGGTCTGACTGGTGAAATCCGT
CGGGTTAACCGTATCGAGCAGCGCATCAACGAAGCGGCAAAGCTGGGCTTCACCAAAGTCTACGCTCCTAAAAACTCTCT
GAACGGCCTCAAAGTTCCAGACAATATCCAAGTCATTGGTGTGACAACGATTGGGGAAGTCTTAAAGAAAGTATTTTCTT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(61-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.832

100

0.918
  radA Streptococcus pneumoniae D39

91.611

100

0.916
  radA Streptococcus pneumoniae R6

91.611

100

0.916
  radA Streptococcus pneumoniae Rx1

91.611

100

0.916
  radA Streptococcus mitis SK321

91.611

100

0.916
  radA Streptococcus pneumoniae TIGR4

91.611

100

0.916
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

100

0.629