Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I6L68_RS21055 Genome accession   NZ_CP077242
Coordinates   4381339..4381968 (-) Length   209 a.a.
NCBI ID   WP_000793790.1    Uniprot ID   A0A7L6ZPA1
Organism   Escherichia fergusonii strain FDAARGOS 1438     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4376339..4386968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L68_RS21040 (I6L68_21040) helD 4376580..4378634 (-) 2055 WP_000420509.1 DNA helicase IV -
  I6L68_RS21045 (I6L68_21045) - 4378757..4379203 (+) 447 WP_002431615.1 YccF domain-containing protein -
  I6L68_RS21050 (I6L68_21050) yccS 4379223..4381376 (+) 2154 WP_032243386.1 YccS family putative transporter -
  I6L68_RS21055 (I6L68_21055) sxy/tfoX 4381339..4381968 (-) 630 WP_000793790.1 TfoX/Sxy family DNA transformation protein Regulator
  I6L68_RS21060 (I6L68_21060) sulA 4382185..4382694 (+) 510 WP_000288735.1 SOS-induced cell division inhibitor SulA -
  I6L68_RS21065 (I6L68_21065) ompA 4383051..4384106 (+) 1056 WP_024256413.1 porin OmpA -
  I6L68_RS21070 (I6L68_21070) matP 4384161..4384616 (-) 456 WP_000877154.1 macrodomain Ter protein MatP -
  I6L68_RS21075 (I6L68_21075) - 4384801..4386561 (+) 1761 WP_000156541.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24359.36 Da        Isoelectric Point: 9.5059

>NTDB_id=580225 I6L68_RS21055 WP_000793790.1 4381339..4381968(-) (sxy/tfoX) [Escherichia fergusonii strain FDAARGOS 1438]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRACEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKSLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRILGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAVWVESLTPDLALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=580225 I6L68_RS21055 WP_000793790.1 4381339..4381968(-) (sxy/tfoX) [Escherichia fergusonii strain FDAARGOS 1438]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGCCTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGAGCCTTGGCAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTCA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTATTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCGCTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGTATGGGTGGAGTCTCTTACGCCAGATCTGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6ZPA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.856

100

0.699