Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I6L29_RS17450 Genome accession   NZ_CP077238
Coordinates   3693442..3694083 (+) Length   213 a.a.
NCBI ID   WP_005078482.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1399     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3688442..3699083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L29_RS17430 (I6L29_17430) - 3688445..3688777 (+) 333 WP_002116981.1 DUF7709 family protein -
  I6L29_RS17435 (I6L29_17435) rrmA 3688780..3689604 (+) 825 WP_005078486.1 putative RNA methyltransferase -
  I6L29_RS17440 (I6L29_17440) ponA 3689661..3692222 (-) 2562 WP_005078484.1 penicillin-binding protein PBP1a -
  I6L29_RS17445 (I6L29_17445) pilM 3692384..3693442 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  I6L29_RS17450 (I6L29_17450) pilN 3693442..3694083 (+) 642 WP_005078482.1 PilN domain-containing protein Machinery gene
  I6L29_RS17455 (I6L29_17455) pilO 3694080..3694859 (+) 780 WP_005067082.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L29_RS17460 (I6L29_17460) pilP 3694871..3695398 (+) 528 WP_005078479.1 pilus assembly protein PilP Machinery gene
  I6L29_RS17465 (I6L29_17465) pilQ 3695461..3697587 (+) 2127 WP_005078477.1 type IV pilus secretin PilQ Machinery gene
  I6L29_RS17470 (I6L29_17470) aroK 3697599..3698168 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23961.46 Da        Isoelectric Point: 5.4186

>NTDB_id=580190 I6L29_RS17450 WP_005078482.1 3693442..3694083(+) (pilN) [Acinetobacter pittii strain FDAARGOS 1399]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLV
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTITDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=580190 I6L29_RS17450 WP_005078482.1 3693442..3694083(+) (pilN) [Acinetobacter pittii strain FDAARGOS 1399]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGCGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGTG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTCACTGT
TGATGTAGGGGAAATGGGTGTGACTATAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.263

100

0.883
  comN Acinetobacter baylyi ADP1

71.078

95.775

0.681