Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SPN034156_RS03980 Genome accession   NC_021006
Coordinates   744701..745627 (-) Length   308 a.a.
NCBI ID   WP_000103701.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN034156     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 739701..750627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034156_RS03950 (SPN034156_07300) treR 740422..741132 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  SPN034156_RS11255 (SPN034156_07310) - 741287..742613 (+) 1327 Protein_756 transposase -
  SPN034156_RS03970 (SPN034156_07320) amiF 742688..743614 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  SPN034156_RS03975 (SPN034156_07330) amiE 743625..744692 (-) 1068 WP_000159554.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  SPN034156_RS03980 (SPN034156_07340) amiD 744701..745627 (-) 927 WP_000103701.1 oligopeptide ABC transporter permease OppC Regulator
  SPN034156_RS03985 (SPN034156_07350) amiC 745627..747123 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  SPN034156_RS03990 (SPN034156_07360) amiA3 747190..749169 (-) 1980 WP_000742230.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34662.82 Da        Isoelectric Point: 9.7939

>NTDB_id=58011 SPN034156_RS03980 WP_000103701.1 744701..745627(-) (amiD) [Streptococcus pneumoniae SPN034156]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVVKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=58011 SPN034156_RS03980 WP_000103701.1 744701..745627(-) (amiD) [Streptococcus pneumoniae SPN034156]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGTCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment