Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   I6L27_RS17375 Genome accession   NZ_CP077232
Coordinates   3667461..3668345 (+) Length   294 a.a.
NCBI ID   WP_081172717.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3662461..3673345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS17350 (I6L27_17355) - 3662772..3664019 (-) 1248 WP_016143545.1 YihY family inner membrane protein -
  I6L27_RS17355 (I6L27_17360) wrbA 3664381..3664989 (+) 609 WP_216967728.1 NAD(P)H:quinone oxidoreductase -
  I6L27_RS17360 (I6L27_17365) xpt 3665036..3665611 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  I6L27_RS17365 (I6L27_17370) - 3665683..3666396 (-) 714 WP_057104940.1 DUF3108 domain-containing protein -
  I6L27_RS17370 (I6L27_17375) - 3666554..3667228 (-) 675 WP_057104941.1 hypothetical protein -
  I6L27_RS17375 (I6L27_17380) tonB2 3667461..3668345 (+) 885 WP_081172717.1 TonB family protein Machinery gene
  I6L27_RS17380 (I6L27_17385) ybeY 3668398..3668874 (-) 477 WP_031949408.1 rRNA maturation RNase YbeY -
  I6L27_RS17385 (I6L27_17390) phoL 3668884..3669972 (-) 1089 WP_002119513.1 PhoH family protein -
  I6L27_RS17390 (I6L27_17395) miaB 3670010..3671461 (-) 1452 WP_216967729.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33733.36 Da        Isoelectric Point: 9.1625

>NTDB_id=580101 I6L27_RS17375 WP_081172717.1 3667461..3668345(+) (tonB2) [Acinetobacter pittii strain FDAARGOS 1397]
MLNKRSRFIEPFHYWWQDRVFVAATILAILLHIFVLLIQFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTLNPMLSDASTGNAELETLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHPILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=580101 I6L27_RS17375 WP_081172717.1 3667461..3668345(+) (tonB2) [Acinetobacter pittii strain FDAARGOS 1397]
ATGCTGAACAAAAGAAGCCGATTCATAGAGCCTTTTCATTATTGGTGGCAAGACAGAGTCTTTGTTGCTGCAACAATATT
AGCAATTTTGCTGCATATTTTTGTATTGCTTATTCAATTTGCTATGCCCAGCCCGTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGACCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTAGCACAAGCAGACCAGCAGGGTTCAGGTGCA
TTTCGTGAGGCTCACCGGACTTCTAGTGATACTCTAAATCCTATGCTTAGTGATGCTTCAACTGGAAATGCAGAGTTAGA
AACTTTGCAAAAGATTCAGCAACAAAGAGAGCTTAAGTTTGAAGAAAAAGTCTTAATGACAGTTTTGAGTTGGCAAAAAC
AAGCTGATGCAAGTCAAAGGAAAAAAGAATTAGAACAATTACAAAGTCAATTTCAGGCAAAAGCTGCGATGGTTGCCAGC
CTTGAAGCACAATATTTACAACGTAGGCAAGATTTCAGCCGCCAGCAAAAAATAAAAACAGTAGACGGAATTCAAGCAAA
GAAAGATGCCTCGGCTGCTTATTTAGATAAGTTCCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTATCCGGAAGAAG
CCAAACAGCAACAACTAAGAGGTGAAGTACGTTTAATGGTGATTTTGAATGCTCAAGGTGGAATTCGTGCAATCCGTTTG
CTTGAAAGCTCAGGGCATCCAATACTTGATGAAGCCGCTAAGTCTTCAGTACGTCGCGGCGCACCATTTGGACATTTTGA
TGCCAATATGAAAGACATTTCGGAATTACGTATTGTGCGTACTTGGCGCTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.435

100

0.884