Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I6L27_RS13580 Genome accession   NZ_CP077232
Coordinates   2882763..2883089 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2877763..2888089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS13560 (I6L27_13565) - 2877866..2878492 (-) 627 WP_016144131.1 FHA domain-containing protein -
  I6L27_RS13565 (I6L27_13570) gspD 2878532..2880808 (-) 2277 WP_216967427.1 type II secretion system secretin GspD -
  I6L27_RS13570 (I6L27_13575) - 2880850..2881686 (-) 837 WP_151748830.1 type II secretion system protein N -
  I6L27_RS13575 (I6L27_13580) gspN 2881686..2882429 (-) 744 WP_216967428.1 type II secretion system protein N -
  I6L27_RS13580 (I6L27_13585) hns 2882763..2883089 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  I6L27_RS13585 (I6L27_13590) - 2883284..2883724 (-) 441 WP_031947174.1 acyl-CoA thioesterase -
  I6L27_RS13590 (I6L27_13595) - 2883732..2884925 (-) 1194 WP_216967429.1 heme biosynthesis protein HemY -
  I6L27_RS13595 (I6L27_13600) - 2884935..2885777 (-) 843 WP_125699862.1 hypothetical protein -
  I6L27_RS13600 (I6L27_13605) hemD 2885786..2886553 (-) 768 WP_216967430.1 uroporphyrinogen-III synthase -
  I6L27_RS13605 (I6L27_13610) hemC 2886557..2887474 (-) 918 WP_205630318.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=580077 I6L27_RS13580 WP_000801427.1 2882763..2883089(-) (hns) [Acinetobacter pittii strain FDAARGOS 1397]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=580077 I6L27_RS13580 WP_000801427.1 2882763..2883089(-) (hns) [Acinetobacter pittii strain FDAARGOS 1397]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTAGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1