Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   I6L27_RS12405 Genome accession   NZ_CP077232
Coordinates   2629154..2629954 (-) Length   266 a.a.
NCBI ID   WP_200043288.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2624154..2634954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS12385 (I6L27_12390) - 2625216..2625914 (-) 699 WP_016144303.1 YfgM family protein -
  I6L27_RS12390 (I6L27_12395) hisS 2625943..2627235 (-) 1293 WP_062849551.1 histidine--tRNA ligase -
  I6L27_RS12395 (I6L27_12400) ispG 2627232..2628347 (-) 1116 WP_062849552.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  I6L27_RS12400 (I6L27_12405) - 2628369..2629163 (-) 795 WP_016144300.1 helix-turn-helix domain-containing protein -
  I6L27_RS12405 (I6L27_12410) pilF 2629154..2629954 (-) 801 WP_200043288.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  I6L27_RS12410 (I6L27_12415) rlmN 2629969..2631204 (-) 1236 WP_002115097.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  I6L27_RS12415 (I6L27_12420) ndk 2631328..2631759 (-) 432 WP_003654870.1 nucleoside-diphosphate kinase -
  I6L27_RS12420 (I6L27_12425) iscX 2631873..2632073 (-) 201 WP_004698764.1 Fe-S cluster assembly protein IscX -
  I6L27_RS12425 (I6L27_12430) - 2632173..2632724 (-) 552 WP_016144298.1 phosphatase PAP2 family protein -
  I6L27_RS12430 (I6L27_12435) - 2632749..2634035 (-) 1287 WP_082183039.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29983.14 Da        Isoelectric Point: 9.0424

>NTDB_id=580069 I6L27_RS12405 WP_200043288.1 2629154..2629954(-) (pilF) [Acinetobacter pittii strain FDAARGOS 1397]
MSIPKLKTVLCMGIAVAFLASGCQTTHTQKKDPEKAVKVRTQLAAEHIRSGDLDSAKRALDQALSVDSRDATANMMMGIL
LQQEGSKTNLEKAEHYFKRAISSEPDNAQAHNNYGTYLYQMGRYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDV
VNAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVHTVGQKNQGARALWIGVRVARANADKMGTQALVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=580069 I6L27_RS12405 WP_200043288.1 2629154..2629954(-) (pilF) [Acinetobacter pittii strain FDAARGOS 1397]
TTGAGTATTCCAAAGTTAAAAACGGTCTTATGTATGGGGATTGCAGTTGCATTTCTGGCAAGTGGTTGCCAGACAACGCA
TACGCAAAAAAAAGACCCGGAAAAAGCAGTAAAAGTGCGTACACAACTTGCTGCTGAACATATCCGTTCTGGTGACTTGG
ACTCAGCAAAGCGAGCTCTTGATCAAGCTTTAAGTGTAGATAGCCGCGATGCAACAGCAAACATGATGATGGGGATTTTG
CTACAGCAAGAAGGTAGCAAAACCAACTTAGAAAAAGCAGAACATTATTTTAAACGAGCAATTTCATCTGAACCGGATAA
TGCTCAAGCACATAATAATTATGGTACTTATTTATACCAAATGGGGCGTTATAATGATGCGATCGAGCAATTTCGTATTG
CTGGTGCAACATTAGGTTATGACCAACGCTATCAGGCATTAGAAAATCTGGGGCGTATTTATTTAAAATTGGGTGATGTT
GTGAATGCTGAAAAAACATTCAAACAAGCACTCCTTGCTAACCGTGACTCTTATATTTCAATGTTAGAGTTAGCGGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGTTCATACAGTGGGGCAGAAAAATCAGG
GTGCAAGAGCACTTTGGATTGGTGTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAACGCAAGCATTAGTAAACCAA
TTACGTGCCTTGTTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(149-205)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_8)

(39-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

92.481

100

0.925
  pilF Acinetobacter baylyi ADP1

75

97.744

0.733