Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   I6L84_RS06450 Genome accession   NZ_CP077224
Coordinates   1310790..1311500 (+) Length   236 a.a.
NCBI ID   WP_045504045.1    Uniprot ID   A0AAW3H7I3
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1305790..1316500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS06440 (I6L84_06440) treC 1306841..1308466 (-) 1626 WP_060554115.1 alpha,alpha-phosphotrehalase -
  I6L84_RS06445 (I6L84_06445) treP 1308602..1310610 (-) 2009 Protein_1252 PTS system trehalose-specific EIIBC component -
  I6L84_RS06450 (I6L84_06450) treR 1310790..1311500 (+) 711 WP_045504045.1 trehalose operon repressor Regulator
  I6L84_RS06455 (I6L84_06455) - 1311894..1313234 (-) 1341 WP_060554114.1 hemolysin family protein -
  I6L84_RS06460 (I6L84_06460) - 1313326..1314972 (-) 1647 WP_060554113.1 phosphoenolpyruvate carboxykinase (ATP) -
  I6L84_RS06465 (I6L84_06465) - 1315072..1316196 (-) 1125 WP_045504054.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27612.76 Da        Isoelectric Point: 9.5008

>NTDB_id=580019 I6L84_RS06450 WP_045504045.1 1310790..1311500(+) (treR) [Streptococcus gordonii strain FDAARGOS 1454]
MKKYQQLFKLIEQDILSEKYPVGEFLPSENELTQIYKVSRDTVRKALEQLQKEGLIQKFKGQGSKIVKQEHINFPISNLT
SYQELVLQNKLDSKTNVISLEKITVDKKLAKLTGFPEYRLVWRIVRQRVVDQVASVLDIDYLDKELVPTMTREIAEHSIY
HFIENNLGLSIDYAKKEITIDHATSRDKILLDIERESHVVSVKSQVYLANGQQFQFTDSRHKLDKFRFVDFAKRHG

Nucleotide


Download         Length: 711 bp        

>NTDB_id=580019 I6L84_RS06450 WP_045504045.1 1310790..1311500(+) (treR) [Streptococcus gordonii strain FDAARGOS 1454]
ATGAAGAAATACCAACAATTATTCAAACTAATCGAGCAAGATATCCTGAGCGAGAAATACCCCGTTGGTGAATTTTTGCC
AAGCGAGAATGAATTAACTCAGATTTATAAAGTCAGCCGTGATACTGTCCGAAAAGCTCTGGAGCAACTTCAAAAAGAAG
GATTAATCCAAAAATTTAAGGGACAAGGATCCAAAATCGTCAAACAGGAACACATCAATTTTCCAATCTCCAATCTGACT
AGCTACCAGGAACTCGTCCTACAAAATAAACTAGACTCTAAAACCAATGTCATCAGCCTAGAAAAGATAACCGTAGATAA
AAAACTTGCTAAGCTAACTGGTTTTCCGGAATATCGCTTGGTTTGGCGAATTGTTCGACAAAGAGTTGTTGATCAGGTTG
CTTCCGTCCTTGATATTGATTATTTGGATAAAGAGCTTGTTCCTACGATGACGAGAGAAATTGCAGAGCATTCTATCTAT
CATTTCATTGAAAACAATCTTGGACTTAGCATCGACTATGCAAAAAAGGAAATCACCATTGATCATGCAACCAGTCGGGA
TAAAATTTTGCTCGATATTGAGAGAGAAAGCCATGTCGTTTCCGTCAAATCTCAGGTTTATTTGGCGAACGGACAACAAT
TTCAGTTCACAGACAGCAGACACAAACTCGATAAATTTCGCTTTGTTGATTTTGCTAAAAGGCACGGTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-65)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.255

99.576

0.64